UHGV-0072728

Genome information

Genome length 37,489 bps

CDS count 54

Completeness 99.76% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072728
vOTU ID	vOTU-008673
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_118942
BioSample	SAMEA2580209
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.82
Jumbo phage	No

Genome content
Genome length	37,489 bps
GC content	40.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.15%
Average CDS length	630.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072728_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0072728_1	PHROG	phrog_5999	DNA methyltransferase	other
UHGV-0072728_1	UniRef90	UniRef90_A0A6N9PTS6	DNA (cytosine-5-)-methyltransferase (Fragment)	NA
UHGV-0072728_1	eggNOG-mapper	697329.Rumal_1386	NA	NA
UHGV-0072728_1	PADLOC	MTase_II_00072	Type II methyltransferase	RM
UHGV-0072728_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0072728_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0072728_2	PHROG	phrog_3782	NA	unknown function
UHGV-0072728_2	UniRef90	UniRef90_A0A3D2QWM1	NA	NA
UHGV-0072728_2	eggNOG-mapper	411902.CLOBOL_04119	NA	NA
UHGV-0072728_2	Pfam	PF14192	NA	DUF4314
UHGV-0072728_2	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0072728_2	Structural annotation	PF14192, MF_00754, NF003019	NA	NA
UHGV-0072728_3	PHROG	phrog_7024	NA	unknown function
UHGV-0072728_3	eggNOG-mapper	1111454.HMPREF1250_1737	NA	NA
UHGV-0072728_3	AcrCatalog	cluster_1398	NA	NA
UHGV-0072728_4	UniRef90	UniRef90_A0A415Z641	Transposase	NA
UHGV-0072728_4	eggNOG-mapper	1121115.AXVN01000050_gene3086	NA	NA
UHGV-0072728_6	PHROG	phrog_199	holin	lysis
UHGV-0072728_6	UniRef90	UniRef90_UPI00164BAF69	phage holin family protein	NA
UHGV-0072728_6	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0072728_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0072728_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0072728_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0072728_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0072728_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072728_7	PHROG	phrog_833	endolysin	lysis
UHGV-0072728_7	UniRef90	UniRef90_R6MSP5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072728_7	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072728_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0072728_7	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0072728_7	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0072728_9	Structural annotation	PF01664	NA	NA
UHGV-0072728_10	PHROG	phrog_18190	NA	unknown function
UHGV-0072728_10	UniRef90	UniRef90_A0A396NP65	Tail fiber domain-containing protein	NA
UHGV-0072728_10	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0072728_10	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0072728_11	PHROG	phrog_1194	NA	unknown function
UHGV-0072728_11	eggNOG-mapper	1449050.JNLE01000003_gene3880	NA	NA
UHGV-0072728_11	Pfam	PF20458	NA	DUF6711
UHGV-0072728_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0072728_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0072728_12	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0072728_12	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0072728_12	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0072728_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0072728_14	PHROG	phrog_8300	NA	unknown function
UHGV-0072728_14	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0072728_14	Structural annotation	PF06854	NA	NA
UHGV-0072728_15	PHROG	phrog_820	major tail protein	tail
UHGV-0072728_15	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0072728_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0072728_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0072728_16	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0072728_16	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0072728_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0072728_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0072728_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0072728_17	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0072728_18	PHROG	phrog_8710	NA	unknown function
UHGV-0072728_18	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0072728_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0072728_19	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0072728_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0072728_20	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0072728_20	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0072728_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0072728_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0072728_21	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0072728_22	PHROG	phrog_2616	NA	unknown function
UHGV-0072728_22	Structural annotation	PF01281	NA	NA
UHGV-0072728_23	PHROG	phrog_918	NA	unknown function
UHGV-0072728_23	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0072728_23	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0072728_23	Pfam	PF19791	NA	DUF6275
UHGV-0072728_23	Structural annotation	PF19791	NA	NA
UHGV-0072728_24	PHROG	phrog_20195	NA	unknown function
UHGV-0072728_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072728_25	UniRef90	UniRef90_A0A373KU77	Minor capsid protein	NA
UHGV-0072728_25	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0072728_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072728_25	COG	COG2369	NA	NA
UHGV-0072728_25	Structural annotation	PF06152	NA	NA
UHGV-0072728_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072728_26	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0072728_26	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0072728_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0072728_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072728_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0072728_27	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0072728_27	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0072728_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072728_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0072728_28	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0072728_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072728_29	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072728_29	UniRef90	UniRef90_R5J7G4	Putative HNH endonuclease	NA
UHGV-0072728_29	eggNOG-mapper	1462526.BN990_03869	NUMOD4 motif	NA
UHGV-0072728_29	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0072728_29	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0072728_29	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0072728_29	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0072728_29	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0072728_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0072728_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0072728_30	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0072728_30	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0072728_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072728_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0072728_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0072728_31	PHROG	phrog_9479	NA	unknown function
UHGV-0072728_31	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-0072728_31	Pfam	PF15529	Bacterial toxin 24	Ntox24
UHGV-0072728_31	Structural annotation	PF15529	NA	NA
UHGV-0072728_32	eggNOG-mapper	557436.Lreu_0830	NA	NA
UHGV-0072728_34	PHROG	phrog_8680	NA	unknown function
UHGV-0072728_34	UniRef90	UniRef90_A0A373KTP5	NA	NA
UHGV-0072728_34	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0072728_34	Pfam	PF14386	NA	DUF4417
UHGV-0072728_34	Structural annotation	PF14386	NA	NA
UHGV-0072728_35	Structural annotation	TIGR01636	NA	NA
UHGV-0072728_36	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-0072728_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0072728_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0072728_37	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0072728_37	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0072728_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0072728_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0072728_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0072728_38	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0072728_38	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0072728_38	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0072728_38	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0072728_38	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0072728_38	Pfam	PF13481	AAA domain	AAA_25
UHGV-0072728_38	COG	COG3598	RecA-family ATPase	NA
UHGV-0072728_38	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0072728_39	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0072728_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0072728_39	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0072728_39	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0072728_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0072728_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0072728_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0072728_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0072728_39	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0072728_40	PHROG	phrog_2698	NA	unknown function
UHGV-0072728_40	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0072728_40	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0072728_40	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0072728_41	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0072728_41	UniRef90	UniRef90_UPI001896F7FA	AAA family ATPase	NA
UHGV-0072728_41	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0072728_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0072728_41	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0072728_43	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0072728_43	PHROG	phrog_1499	NA	unknown function
UHGV-0072728_43	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0072728_43	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0072728_43	Pfam	PF13476	AAA domain	AAA_23
UHGV-0072728_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0072728_43	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0072728_46	PHROG	phrog_6058	NA	unknown function
UHGV-0072728_46	Structural annotation	NF033787	NA	NA
UHGV-0072728_47	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0072728_49	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0072728_50	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0072728_50	UniRef90	UniRef90_A0A374LFE2	DNA cytosine methyltransferase	NA
UHGV-0072728_50	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0072728_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0072728_50	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0072728_51	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0072728_51	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0072728_51	UniRef90	UniRef90_A0A1M7HTW9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0072728_51	eggNOG-mapper	1444310.JANV01000096_gene3232	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0072728_51	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0072728_51	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0072728_51	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0072728_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0072728_51	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0072728_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0072728_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072728_53	UniRef90	UniRef90_A0A374MYQ7	XRE family transcriptional regulator	NA
UHGV-0072728_53	eggNOG-mapper	537013.CLOSTMETH_02500	NA	NA
UHGV-0072728_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072728_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072728_53	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0072728_54	KOfam	K14059	int; integrase	NA
UHGV-0072728_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0072728_54	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0072728_54	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0072728_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0072728_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0072728_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA