UHGV-0072763

Genome information

Genome length 38,904 bps

CDS count 46

Completeness 84.46% (medium-quality)

geNomad score 0.9391

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072763
vOTU ID	vOTU-018993
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_130637
BioSample	SAMEA2737769
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9391
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.32
Jumbo phage	No

Genome content
Genome length	38,904 bps
GC content	54.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	86.63%
Average CDS length	734.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072763_1	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0072763_1	UniRef90	UniRef90_A0A7X6YCS9	Virulence associated protein	NA
UHGV-0072763_1	eggNOG-mapper	767817.Desgi_4514	NA	NA
UHGV-0072763_1	AcrCatalog	cluster_58247	NA	NA
UHGV-0072763_1	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0072763_1	Structural annotation	PF12224	NA	NA
UHGV-0072763_4	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-0072763_4	Structural annotation	PF13230, MF_01931, TIGR03442, COG0121	NA	NA
UHGV-0072763_5	PHROG	phrog_2945	NA	unknown function
UHGV-0072763_6	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0072763_6	UniRef90	UniRef90_A0A6N7STI2	Phage terminase small subunit P27 family	NA
UHGV-0072763_6	eggNOG-mapper	1235800.C819_04044	NA	NA
UHGV-0072763_6	Structural annotation	PF12224	NA	NA
UHGV-0072763_7	eggNOG-mapper	994573.T472_0211825	NA	NA
UHGV-0072763_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072763_8	UniRef90	UniRef90_A0A3M0SXP1	NA	NA
UHGV-0072763_8	eggNOG-mapper	203119.Cthe_1732	sigma factor activity	NA
UHGV-0072763_8	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0072763_8	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0072763_9	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0072763_9	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0072763_9	UniRef90	UniRef90_A0A1V5KVI3	Helicase ATP-binding domain-containing protein	NA
UHGV-0072763_9	eggNOG-mapper	748727.CLJU_c03440	snf2 family	NA
UHGV-0072763_9	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0072763_9	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0072763_9	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0072763_9	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0072763_10	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072763_10	UniRef90	UniRef90_A0A1Q6PU15	Nuclease	NA
UHGV-0072763_10	eggNOG-mapper	573061.Clocel_3994	VRR-NUC domain-containing protein	NA
UHGV-0072763_10	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0072763_11	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0072763_11	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0072763_11	UniRef90	UniRef90_A0A1Q6PTN1	DNA primase	NA
UHGV-0072763_11	eggNOG-mapper	908340.HMPREF9406_0153	Phage plasmid primase, P4 family	NA
UHGV-0072763_11	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0072763_11	Pfam	PF19263	NA	DUF5906
UHGV-0072763_11	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0072763_11	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0072763_11	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0072763_12	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0072763_12	UniRef90	UniRef90_A0A1Q6PTQ1	NA	NA
UHGV-0072763_12	eggNOG-mapper	742741.HMPREF9475_02391	NA	NA
UHGV-0072763_12	Pfam	PF14359	NA	DUF4406
UHGV-0072763_12	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0072763_13	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0072763_13	UniRef90	UniRef90_A0A1Q6PTP1	Transcriptional regulator	NA
UHGV-0072763_13	eggNOG-mapper	755731.Clo1100_3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0072763_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0072763_13	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0072763_13	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0072763_13	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0072763_14	PHROG	phrog_21057	NA	unknown function
UHGV-0072763_14	eggNOG-mapper	1286171.EAL2_c05670	NA	NA
UHGV-0072763_14	Structural annotation	PF13451	NA	NA
UHGV-0072763_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0072763_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0072763_15	UniRef90	UniRef90_A0A1Q6PTN2	POLAc domain-containing protein	NA
UHGV-0072763_15	eggNOG-mapper	1410624.JNKK01000017_gene1958	DNA polymerase A domain	NA
UHGV-0072763_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0072763_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0072763_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0072763_17	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0072763_17	UniRef90	UniRef90_A0A2V2FVS9	NA	NA
UHGV-0072763_17	eggNOG-mapper	457415.HMPREF1006_00442	NA	NA
UHGV-0072763_17	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0072763_17	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0072763_18	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072763_18	UniRef90	UniRef90_A0A1Q6PTN6	Nuclease	NA
UHGV-0072763_18	eggNOG-mapper	742741.HMPREF9475_02396	NA	NA
UHGV-0072763_18	Pfam	PF10926	NA	DUF2800
UHGV-0072763_18	COG	COG2887	RecB family exonuclease	NA
UHGV-0072763_18	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0072763_19	PHROG	phrog_408	NA	unknown function
UHGV-0072763_19	UniRef90	UniRef90_A0A2V2FUE3	DNA ligase	NA
UHGV-0072763_19	eggNOG-mapper	457415.HMPREF1006_00440	NA	NA
UHGV-0072763_21	PHROG	phrog_4031	NA	unknown function
UHGV-0072763_21	UniRef90	UniRef90_A0A1Y4FAY6	Peptidase_M78 domain-containing protein	NA
UHGV-0072763_21	eggNOG-mapper	203119.Cthe_1654	Zn peptidase	NA
UHGV-0072763_21	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0072763_21	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0072763_21	Structural annotation	PF18166, PF13560, PF06114, NF041951, NF038139, COG2856, COG1476	NA	NA
UHGV-0072763_22	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0072763_22	UniRef90	UniRef90_A0A3D4JY83	XRE family transcriptional regulator	NA
UHGV-0072763_22	eggNOG-mapper	568816.Acin_1887	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0072763_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0072763_22	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0072763_22	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0072763_23	UniRef90	UniRef90_A0A3A8U437	Three-Cys-motif partner protein TcmP	NA
UHGV-0072763_23	eggNOG-mapper	573061.Clocel_2654	NA	NA
UHGV-0072763_23	NCBIFam	TIGR04474.1	three-Cys-motif partner protein TcmP	NA
UHGV-0072763_23	Structural annotation	PF02005, MF_00934, TIGR04474, COG2961	NA	NA
UHGV-0072763_24	PHROG	phrog_13321	NA	unknown function
UHGV-0072763_24	UniRef90	UniRef90_A0A1I3I4Y8	DNA repair photolyase	NA
UHGV-0072763_24	eggNOG-mapper	573061.Clocel_2653	DNA photolyase activity	NA
UHGV-0072763_24	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0072763_24	COG	COG1533	DNA repair photolyase	NA
UHGV-0072763_24	Structural annotation	PF20903, MF_00917, NF033668, COG4422	NA	NA
UHGV-0072763_25	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0072763_25	PHROG	phrog_34860	NA	unknown function
UHGV-0072763_25	UniRef90	UniRef90_UPI00189C3A8F	type I restriction-modification system subunit M	NA
UHGV-0072763_25	eggNOG-mapper	552396.HMPREF0863_01409	NA	NA
UHGV-0072763_25	PADLOC	MTase_I_00012	Type I methyltransferase	RM
UHGV-0072763_25	Pfam	PF12161	HsdM N-terminal domain	HsdM_N
UHGV-0072763_25	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0072763_25	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0072763_26	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-0072763_26	PHROG	phrog_2668	NA	unknown function
UHGV-0072763_26	UniRef90	UniRef90_A0A1V4W7C6	Type I restriction modification DNA specificity domain protein	NA
UHGV-0072763_26	eggNOG-mapper	879309.HMPREF9199_0690	Type I restriction modification DNA specificity domain	NA
UHGV-0072763_26	PADLOC	Specificity_I_00123	Type I specificity subunit	RM
UHGV-0072763_26	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0072763_26	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-0072763_26	Structural annotation	PF01420, NF007278, COG0732	NA	NA
UHGV-0072763_27	KOfam	K01153	hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]	NA
UHGV-0072763_27	PHROG	phrog_3830	NA	unknown function
UHGV-0072763_27	UniRef90	UniRef90_B0PCJ5	Type I site-specific deoxyribonuclease	NA
UHGV-0072763_27	eggNOG-mapper	445972.ANACOL_02505	Type III restriction	NA
UHGV-0072763_27	PADLOC	REase_I_00001	Type I restriction enzyme	RM
UHGV-0072763_27	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0072763_27	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-0072763_27	COG	COG0610	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ...	NA
UHGV-0072763_27	Structural annotation	PF12008, PF04313, PF18766, MF_00968, TIGR00348, COG0610	NA	NA
UHGV-0072763_30	PHROG	phrog_2308	NA	unknown function
UHGV-0072763_30	UniRef90	UniRef90_UPI0009455B6C	RNA polymerase subunit sigma-70	NA
UHGV-0072763_30	eggNOG-mapper	397290.C810_01273	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0072763_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0072763_31	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-0072763_32	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0072763_33	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0072763_33	UniRef90	UniRef90_A0A3D5IDX7	DnaB_2 domain-containing protein	NA
UHGV-0072763_33	eggNOG-mapper	1139219.I569_00217	Replication initiation and membrane attachment	NA
UHGV-0072763_33	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0072763_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0072763_33	Structural annotation	PF03444, MF_01911, TIGR01610, COG5529	NA	NA
UHGV-0072763_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072763_36	UniRef90	UniRef90_A0A374MZ02	NA	NA
UHGV-0072763_36	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0072763_36	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0072763_36	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0072763_37	UniRef90	UniRef90_A0A3D2GX58	HTH cro/C1-type domain-containing protein	NA
UHGV-0072763_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072763_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072763_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0072763_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0072763_38	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0072763_38	UniRef90	UniRef90_A0A3D5IBW1	Terminase small subunit	NA
UHGV-0072763_38	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0072763_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072763_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0072763_38	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0072763_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072763_39	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0072763_39	UniRef90	UniRef90_A0A1Q6Q1R5	Terminase	NA
UHGV-0072763_39	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0072763_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0072763_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0072763_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0072763_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072763_39	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0072763_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072763_40	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0072763_40	UniRef90	UniRef90_A0A3D5ID44	Phage_Mu_F domain-containing protein	NA
UHGV-0072763_40	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0072763_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0072763_40	COG	COG2369	NA	NA
UHGV-0072763_40	Structural annotation	PF04233, PF15188, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0072763_41	eggNOG-mapper	1095750.HMPREF9970_0107	NA	NA
UHGV-0072763_43	PHROG	phrog_1129	holin	lysis
UHGV-0072763_43	UniRef90	UniRef90_A0A3D5IBP7	Enolase	NA
UHGV-0072763_43	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0072763_43	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0072763_43	Structural annotation	PF06946	NA	NA
UHGV-0072763_44	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0072763_44	PHROG	phrog_329	minor tail protein	tail
UHGV-0072763_44	UniRef90	UniRef90_A0A3D5IDY5	NlpC/P60 domain-containing protein	NA
UHGV-0072763_44	eggNOG-mapper	471852.Tcur_4480	NlpC/P60 family	NA
UHGV-0072763_44	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0072763_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0072763_44	Structural annotation	PF00877, NF033742, COG0791	NA	NA
UHGV-0072763_46	PHROG	phrog_1863	NA	unknown function
UHGV-0072763_46	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0072763_46	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA