UHGV-0072892

Genome information

Genome length 15,159 bps

CDS count 22

Completeness 73.92% (medium-quality)

geNomad score 0.9652

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072892
vOTU ID	vOTU-032557
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_105448
BioSample	SAMEA2452121
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9652
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.68
Jumbo phage	No

Genome content
Genome length	15,159 bps
GC content	33.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	94.50%
Average CDS length	655.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072892_2	PHROG	phrog_2150	terminase	head and packaging
UHGV-0072892_2	UniRef90	UniRef90_UPI0009B42C61	phage DNA encapsidation protein	NA
UHGV-0072892_2	eggNOG-mapper	1094755.MCO_01569	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0072892_2	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0072892_2	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072892_5	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0072892_5	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0072892_5	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0072892_5	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0072892_5	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0072892_5	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0072892_6	Pfam	PF05435	Phi-29 DNA terminal protein GP3	Phi-29_GP3
UHGV-0072892_6	Structural annotation	PF05435	NA	NA
UHGV-0072892_7	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0072892_7	UniRef90	UniRef90_B6RT34	SsDNA binding protein	NA
UHGV-0072892_7	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0072892_7	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0072892_7	Structural annotation	PF17427	NA	NA
UHGV-0072892_8	Structural annotation	PF17548	NA	NA
UHGV-0072892_10	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072892_10	PHROG	phrog_435	endolysin	lysis
UHGV-0072892_10	UniRef90	UniRef90_A0A6N3CDT7	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0072892_10	eggNOG-mapper	908340.HMPREF9406_2562	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072892_10	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0072892_10	Pfam	PF05036	SPOR domain	SPOR
UHGV-0072892_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072892_10	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0072892_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0072892_12	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0072892_12	eggNOG-mapper	12345.CAPSD_BPGA1	T=13 icosahedral viral capsid	NA
UHGV-0072892_12	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0072892_13	PHROG	phrog_2248	tail protein	tail
UHGV-0072892_13	UniRef90	UniRef90_A0A8F2J8E2	Tail knob protein	NA
UHGV-0072892_13	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0072892_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0072892_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0072892_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-0072892_14	UniRef90	UniRef90_Q9FZW5	Head-tail connector (Portal protein)	NA
UHGV-0072892_14	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0072892_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0072892_14	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0072892_15	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0072892_15	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-0072892_15	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0072892_16	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0072892_16	PHROG	phrog_6700	endolysin	lysis
UHGV-0072892_16	UniRef90	UniRef90_UPI0013E930DC	M23 family metallopeptidase	NA
UHGV-0072892_16	eggNOG-mapper	1458462.JNLK01000001_gene233	Peptidase family M23	NA
UHGV-0072892_16	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0072892_16	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA