UHGV-0072893

Genome information

Genome length 23,118 bps

CDS count 41

Completeness 52.49% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072893
vOTU ID	vOTU-022752
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_132229
BioSample	SAMEA2737798
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.83
Jumbo phage	No

Genome content
Genome length	23,118 bps
GC content	55.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	95.29%
Average CDS length	542.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072893_2	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0072893_5	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0072893_5	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0072893_5	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0072893_6	PHROG	phrog_9300	NA	unknown function
UHGV-0072893_11	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0072893_11	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0072893_12	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0072893_13	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0072893_13	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0072893_13	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0072893_13	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0072893_13	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072893_13	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0072893_13	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0072893_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072893_14	PHROG	phrog_10250	NA	unknown function
UHGV-0072893_14	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0072893_14	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0072893_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0072893_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0072893_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072893_14	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072893_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072893_15	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0072893_15	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0072893_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0072893_17	PHROG	phrog_9479	NA	unknown function
UHGV-0072893_17	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0072893_17	Structural annotation	PF15529	NA	NA
UHGV-0072893_18	PHROG	phrog_8680	NA	unknown function
UHGV-0072893_18	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0072893_18	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0072893_18	Pfam	PF14386	NA	DUF4417
UHGV-0072893_18	Structural annotation	PF14386	NA	NA
UHGV-0072893_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072893_19	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0072893_19	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0072893_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072893_19	COG	COG2369	NA	NA
UHGV-0072893_19	Structural annotation	PF06152	NA	NA
UHGV-0072893_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072893_21	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0072893_21	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0072893_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072893_21	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0072893_22	PHROG	phrog_909	major head protein	head and packaging
UHGV-0072893_22	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0072893_22	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0072893_22	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0072893_22	Structural annotation	PF02924	NA	NA
UHGV-0072893_23	PHROG	phrog_29	major head protein	head and packaging
UHGV-0072893_23	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0072893_23	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0072893_23	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0072893_23	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0072893_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0072893_24	eggNOG-mapper	663278.Ethha_0095	NA	NA
UHGV-0072893_25	PHROG	phrog_3366	NA	unknown function
UHGV-0072893_25	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0072893_25	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0072893_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0072893_26	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0072893_26	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0072893_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0072893_26	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0072893_27	PHROG	phrog_3266	tail completion	connector
UHGV-0072893_27	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0072893_27	Structural annotation	PF12691	NA	NA
UHGV-0072893_28	PHROG	phrog_3099	NA	unknown function
UHGV-0072893_28	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0072893_28	Structural annotation	TIGR02126	NA	NA
UHGV-0072893_29	PHROG	phrog_11299	NA	unknown function
UHGV-0072893_29	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0072893_29	Structural annotation	PF10666	NA	NA
UHGV-0072893_30	PHROG	phrog_706	NA	unknown function
UHGV-0072893_30	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0072893_30	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0072893_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0072893_30	Structural annotation	PF06854	NA	NA
UHGV-0072893_31	PHROG	phrog_806	NA	unknown function
UHGV-0072893_31	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0072893_31	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0072893_31	Pfam	PF11611	NA	DUF4352
UHGV-0072893_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0072893_33	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0072893_33	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0072893_33	COG	COG1511	NA	NA
UHGV-0072893_33	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0072893_34	PHROG	phrog_1194	NA	unknown function
UHGV-0072893_34	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0072893_34	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0072893_35	PHROG	phrog_13879	NA	unknown function
UHGV-0072893_35	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0072893_35	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0072893_36	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0072893_39	PHROG	phrog_10898	NA	unknown function
UHGV-0072893_39	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0072893_39	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0072893_39	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0072893_39	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0072893_40	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0072893_41	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA