UHGV-0072919

Genome information

Genome length 24,596 bps

CDS count 36

Completeness 77.89% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072919
vOTU ID	vOTU-029595
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127571
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.92
Jumbo phage	No

Genome content
Genome length	24,596 bps
GC content	57.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.36%
Average CDS length	641.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072919_1	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0072919_1	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0072919_1	UniRef90	UniRef90_A0A416DGY9	ParA family protein	NA
UHGV-0072919_1	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0072919_1	Pfam	PF13614	AAA domain	AAA_31
UHGV-0072919_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0072919_1	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0072919_2	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0072919_2	PHROG	phrog_27290	NA	unknown function
UHGV-0072919_2	UniRef90	UniRef90_UPI00164CBD08	ParB N-terminal domain-containing protein	NA
UHGV-0072919_2	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0072919_2	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0072919_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0072919_2	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0072919_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0072919_5	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0072919_5	UniRef90	UniRef90_A0A417TSH5	Methyltransferase	NA
UHGV-0072919_5	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0072919_5	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0072919_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0072919_5	COG	COG0863	DNA modification methylase	NA
UHGV-0072919_5	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0072919_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0072919_7	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0072919_7	Structural annotation	PF01446	NA	NA
UHGV-0072919_8	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0072919_8	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072919_8	UniRef90	UniRef90_A0A396QGN3	HNH endonuclease	NA
UHGV-0072919_8	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0072919_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0072919_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0072919_9	PHROG	phrog_1066	NA	unknown function
UHGV-0072919_9	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-0072919_9	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0072919_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0072919_11	UniRef90	UniRef90_A0A396Q7Z1	Terminase large subunit	NA
UHGV-0072919_11	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0072919_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0072919_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0072919_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0072919_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0072919_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0072919_12	UniRef90	UniRef90_A0A396QRU6	Phage portal protein	NA
UHGV-0072919_12	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0072919_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0072919_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0072919_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0072919_13	KOfam	K06904	NA	NA
UHGV-0072919_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0072919_13	UniRef90	UniRef90_A0A396QDF0	HK97 family phage prohead protease	NA
UHGV-0072919_13	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0072919_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0072919_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0072919_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0072919_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0072919_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0072919_14	UniRef90	UniRef90_A0A417VTC4	Phage major capsid protein	NA
UHGV-0072919_14	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-0072919_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0072919_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0072919_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0072919_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0072919_15	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0072919_15	UniRef90	UniRef90_A0A396Q9S6	Phage gp6-like head-tail connector protein	NA
UHGV-0072919_15	eggNOG-mapper	1209989.TepiRe1_2602	Phage gp6-like head-tail connector protein	NA
UHGV-0072919_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0072919_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0072919_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0072919_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0072919_16	UniRef90	UniRef90_A0A396Q875	Head-tail adaptor protein	NA
UHGV-0072919_16	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0072919_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0072919_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0072919_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0072919_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0072919_17	UniRef90	UniRef90_UPI00164CD2CD	HK97 gp10 family phage protein	NA
UHGV-0072919_17	eggNOG-mapper	632245.CLP_2914	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0072919_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0072919_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0072919_18	PHROG	phrog_525	NA	unknown function
UHGV-0072919_18	Pfam	PF20765	NA	DUF6838
UHGV-0072919_18	Structural annotation	PF20765	NA	NA
UHGV-0072919_19	PHROG	phrog_1480	tail sheath	tail
UHGV-0072919_19	UniRef90	UniRef90_A0A396Q9E2	Phage tail protein	NA
UHGV-0072919_19	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0072919_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0072919_19	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0072919_20	PHROG	phrog_365	tail protein	tail
UHGV-0072919_20	UniRef90	UniRef90_A0A396QGP2	Terminase	NA
UHGV-0072919_20	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0072919_20	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0072919_20	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0072919_21	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0072919_21	eggNOG-mapper	632245.CLP_2608	NA	NA
UHGV-0072919_21	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0072919_23	PHROG	phrog_23464	NA	unknown function
UHGV-0072919_23	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0072919_23	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0072919_23	COG	COG5283	Phage-related tail protein	NA
UHGV-0072919_23	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0072919_24	PHROG	phrog_23201	NA	unknown function
UHGV-0072919_24	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0072919_24	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0072919_24	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0072919_24	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0072919_25	PHROG	phrog_400	tail protein	tail
UHGV-0072919_25	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0072919_25	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0072919_25	Pfam	PF05257	CHAP domain	CHAP
UHGV-0072919_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0072919_25	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0072919_26	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0072919_27	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0072919_27	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0072919_27	Pfam	PF10934	NA	DUF2634
UHGV-0072919_27	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0072919_27	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0072919_28	PHROG	phrog_6	baseplate protein	tail
UHGV-0072919_28	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0072919_28	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0072919_28	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0072919_28	COG	COG3299	NA	NA
UHGV-0072919_28	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0072919_29	PHROG	phrog_521	tail protein	tail
UHGV-0072919_29	UniRef90	UniRef90_UPI00164AAA6D	NA	NA
UHGV-0072919_29	eggNOG-mapper	1120998.AUFC01000013_gene2954	NA	NA
UHGV-0072919_29	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0072919_29	COG	COG3778	NA	NA
UHGV-0072919_29	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0072919_30	Structural annotation	PF08931	NA	NA
UHGV-0072919_32	eggNOG-mapper	1232443.BAIA02000008_gene661	NA	NA
UHGV-0072919_34	PHROG	phrog_937	hemolysin	other
UHGV-0072919_34	eggNOG-mapper	478749.BRYFOR_07639	NA	NA
UHGV-0072919_35	UniRef90	UniRef90_A0A417VVG5	Phage holin	NA
UHGV-0072919_35	eggNOG-mapper	445972.ANACOL_01874	COG COG5546 Small integral membrane protein	NA
UHGV-0072919_35	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0072919_35	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0072919_35	COG	COG5546	NA	NA
UHGV-0072919_35	Structural annotation	COG5546	NA	NA
UHGV-0072919_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072919_36	PHROG	phrog_670	endolysin	lysis
UHGV-0072919_36	UniRef90	UniRef90_A0A845N0R6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0072919_36	eggNOG-mapper	1120998.AUFC01000016_gene8	Ami_2	NA
UHGV-0072919_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0072919_36	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0072919_36	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA