UHGV-0072928

Genome information

Genome length 41,168 bps

CDS count 56

Completeness 75.95% (medium-quality)

geNomad score 0.9585

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072928
vOTU ID	vOTU-023915
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_106239
BioSample	SAMEA2452116
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	Yes

Viral signal
geNomad score	0.9585
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34
Jumbo phage	No

Genome content
Genome length	41,168 bps
GC content	34.11%
Genetic code	The mold, protozoan, and coelenterate mitochondrial code and the mycoplasma/spiroplasma code (4)
CDS count	56
CDS density	87.85%
Average CDS length	648.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072928_1	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-0072928_8	PHROG	phrog_15439	peptidase	other
UHGV-0072928_8	eggNOG-mapper	756499.Desde_4127	tail collar domain protein	NA
UHGV-0072928_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0072928_10	Structural annotation	PF09097, COG3500	NA	NA
UHGV-0072928_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0072928_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0072928_16	UniRef90	UniRef90_A0A1Z1LZL2	Major capsid protein	NA
UHGV-0072928_16	eggNOG-mapper	1462526.BN990_03875	NA	NA
UHGV-0072928_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072928_17	UniRef90	UniRef90_UPI0008DA37CF	phage scaffolding protein	NA
UHGV-0072928_17	eggNOG-mapper	363555.Q20DD5_9CAUD	viral scaffold	NA
UHGV-0072928_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072928_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072928_18	eggNOG-mapper	1262449.CP6013_3193	Phage minor capsid protein 2	NA
UHGV-0072928_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072928_18	COG	COG2369	NA	NA
UHGV-0072928_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072928_19	eggNOG-mapper	945712.CULC22_01689	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0072928_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0072928_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072928_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0072928_20	UniRef90	UniRef90_A0A1H3F9U6	Phage terminase, large subunit, PBSX family	NA
UHGV-0072928_20	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0072928_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0072928_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072928_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072928_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0072928_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0072928_21	UniRef90	UniRef90_A0A429X2T2	Terminase small subunit	NA
UHGV-0072928_21	eggNOG-mapper	1462526.BN990_03868	Terminase small subunit	NA
UHGV-0072928_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072928_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0072928_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0072928_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072928_22	Pfam	PF07374	NA	DUF1492
UHGV-0072928_24	PHROG	phrog_8470	NA	unknown function
UHGV-0072928_24	UniRef90	UniRef90_A0A843HNH2	PcfJ domain-containing protein	NA
UHGV-0072928_24	eggNOG-mapper	330397.A8ATM0_9CAUD	PcfJ-like protein	NA
UHGV-0072928_24	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0072928_25	PHROG	phrog_7445	NA	unknown function
UHGV-0072928_25	eggNOG-mapper	742766.HMPREF9455_01852	PcfK-like protein	NA
UHGV-0072928_25	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0072928_26	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0072928_26	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0072928_26	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0072928_27	PHROG	phrog_11769	NA	unknown function
UHGV-0072928_27	UniRef90	UniRef90_A0A415S878	Replication protein	NA
UHGV-0072928_27	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0072928_27	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0072928_27	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0072928_27	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3756	NA	NA
UHGV-0072928_28	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0072928_28	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0072928_28	UniRef90	UniRef90_A0A3C2EIY2	MBL fold metallo-hydrolase	NA
UHGV-0072928_28	eggNOG-mapper	1121085.AUCI01000010_gene514	Metallo-beta-lactamase superfamily	NA
UHGV-0072928_28	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0072928_28	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0072928_28	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0072928_29	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0072928_29	UniRef90	UniRef90_R7GFF2	Putative phage protein	NA
UHGV-0072928_29	eggNOG-mapper	665959.HMPREF1013_05342	NA	NA
UHGV-0072928_29	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0072928_30	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0072928_30	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072928_30	UniRef90	UniRef90_A0A6N7S5U7	AAA family ATPase	NA
UHGV-0072928_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0072928_30	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0072928_31	PHROG	phrog_5765	NA	unknown function
UHGV-0072928_31	UniRef90	UniRef90_A0A845LYH5	BC1881 family protein	NA
UHGV-0072928_31	eggNOG-mapper	642492.Clole_0933	NA	NA
UHGV-0072928_31	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0072928_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0072928_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0072928_32	UniRef90	UniRef90_A0A7C6NYG1	BRO family protein	NA
UHGV-0072928_32	eggNOG-mapper	720554.Clocl_3736	BRO family, N-terminal domain	NA
UHGV-0072928_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0072928_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0072928_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0072928_32	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0072928_35	eggNOG-mapper	537007.BLAHAN_05459	NA	NA
UHGV-0072928_37	eggNOG-mapper	904306.HMPREF9192_0303	TRANSCRIPTIONal	NA
UHGV-0072928_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072928_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0072928_44	UniRef90	UniRef90_R7GHY8	Transcriptional regulator helix-turn-helix XRE-family	NA
UHGV-0072928_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072928_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0072928_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0072928_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0072928_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072928_46	UniRef90	UniRef90_A0A345BNV7	HTH_XRE protein	NA
UHGV-0072928_46	eggNOG-mapper	1582156.A0A0A8WFG2_9CAUD	sequence-specific DNA binding	NA
UHGV-0072928_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0072928_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072928_46	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0072928_47	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0072928_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072928_47	UniRef90	UniRef90_A0A3T0LZF6	Helix-turn-helix domain-containing protein	NA
UHGV-0072928_47	eggNOG-mapper	431943.CKL_3317	transcriptional regulator	NA
UHGV-0072928_47	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0072928_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072928_47	Pfam	PF13413	Helix-turn-helix domain	HTH_25
UHGV-0072928_47	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0072928_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072928_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0072928_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072928_48	UniRef90	UniRef90_UPI0007BC1A73	helix-turn-helix domain-containing protein	NA
UHGV-0072928_48	eggNOG-mapper	1123302.KB904185_gene810	Helix-turn-helix domain	NA
UHGV-0072928_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0072928_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072928_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0072928_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0072928_48	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0072928_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072928_50	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0072928_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072928_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0072928_54	PHROG	phrog_95	integrase	integration and excision
UHGV-0072928_54	UniRef90	UniRef90_A0A847BS46	Recombinase family protein	NA
UHGV-0072928_54	eggNOG-mapper	521098.Aaci_0463	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0072928_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0072928_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-0072928_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0072928_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0072928_54	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0072928_55	KOfam	K04772	degQ, hhoA; serine protease DegQ [EC:3.4.21.-]	NA
UHGV-0072928_55	PHROG	phrog_11383	NA	unknown function
UHGV-0072928_55	UniRef90	UniRef90_A0A1Q6MA03	PDZ domain-containing protein	NA
UHGV-0072928_55	eggNOG-mapper	645991.Sgly_0982	PDZ DHR GLGF domain protein	NA
UHGV-0072928_55	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-0072928_55	Pfam	PF13180	PDZ domain	PDZ_2
UHGV-0072928_55	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0072928_56	KOfam	K08372	pepD; putative serine protease PepD [EC:3.4.21.-]	NA
UHGV-0072928_56	PHROG	phrog_11383	NA	unknown function
UHGV-0072928_56	UniRef90	UniRef90_R7GCJ0	2-alkenal reductase	NA
UHGV-0072928_56	eggNOG-mapper	1089548.KI783301_gene3166	peptidase S1 and S6 chymotrypsin Hap	NA
UHGV-0072928_56	PADLOC	retron_type_XI_RT_typeXI	single gene	Retron
UHGV-0072928_56	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-0072928_56	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA