UHGV-0072933

Genome information

Genome length 28,082 bps

CDS count 37

Completeness 67.48% (medium-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072933
vOTU ID	vOTU-016602
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_106219
BioSample	SAMEA2452119
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.44
Jumbo phage	No

Genome content
Genome length	28,082 bps
GC content	29.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.28%
Average CDS length	702.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072933_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0072933_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0072933_1	UniRef90	UniRef90_A0A0X8KA44	Peptidase_S24 domain-containing protein	NA
UHGV-0072933_1	eggNOG-mapper	1121423.JONT01000009_gene1523	PFAM Peptidase S24 S26A S26B, conserved region	NA
UHGV-0072933_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0072933_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0072933_1	Structural annotation	PF00717, NF007621	NA	NA
UHGV-0072933_2	KOfam	K14059	int; integrase	NA
UHGV-0072933_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0072933_2	UniRef90	UniRef90_UPI0018980724	site-specific integrase	NA
UHGV-0072933_2	eggNOG-mapper	272563.CD630_09040	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0072933_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0072933_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0072933_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0072933_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0072933_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0072933_3	KOfam	K03704	cspA; cold shock protein	NA
UHGV-0072933_3	PHROG	phrog_729	cold shock protein	other
UHGV-0072933_3	UniRef90	UniRef90_A0A1V1I0S6	Cold shock protein	NA
UHGV-0072933_3	eggNOG-mapper	1391646.AVSU01000115_gene888	'Cold-shock' DNA-binding domain	NA
UHGV-0072933_3	PADLOC	retron_type_V_csd_cluster85_1	NA	Retron
UHGV-0072933_3	Pfam	PF00313	'Cold-shock' DNA-binding domain	CSD
UHGV-0072933_3	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0072933_3	Structural annotation	PF00313, NF007062, COG1278	NA	NA
UHGV-0072933_4	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0072933_4	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0072933_4	UniRef90	UniRef90_UPI0008DA0A0D	ParM/StbA family protein	NA
UHGV-0072933_4	eggNOG-mapper	1196322.A370_01998	StbA protein	NA
UHGV-0072933_4	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0072933_4	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0072933_4	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0072933_4	Structural annotation	PF21522, PF17989, MF_02207, NF010498, COG1077	NA	NA
UHGV-0072933_5	PHROG	phrog_18533	NA	unknown function
UHGV-0072933_6	PHROG	phrog_5156	NA	unknown function
UHGV-0072933_6	UniRef90	UniRef90_A0A1C5W2M7	AAA-like domain	NA
UHGV-0072933_6	eggNOG-mapper	545697.HMPREF0216_02885	COG0433 Predicted ATPase	NA
UHGV-0072933_6	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0072933_6	Structural annotation	PF02534, NF041017, COG3451	NA	NA
UHGV-0072933_11	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0072933_11	PHROG	phrog_14556	NA	unknown function
UHGV-0072933_11	UniRef90	UniRef90_A0A8F9KZC0	S-layer homology domain-containing protein	NA
UHGV-0072933_11	eggNOG-mapper	1292035.H476_0575	Belongs to the 5'-nucleotidase family	NA
UHGV-0072933_11	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0072933_11	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0072933_11	COG	COG0737	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	NA
UHGV-0072933_12	PHROG	phrog_2329	NA	unknown function
UHGV-0072933_12	UniRef90	UniRef90_UPI0018AB79C1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0072933_12	eggNOG-mapper	469617.FUAG_02549	NA	NA
UHGV-0072933_12	Structural annotation	MF_01193, NF007312, COG2336	NA	NA
UHGV-0072933_13	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072933_13	UniRef90	UniRef90_UPI00189BDDB8	AP2 domain-containing protein	NA
UHGV-0072933_13	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0072933_13	AcrCatalog	cluster_5564	NA	NA
UHGV-0072933_13	Pfam	PF00847	AP2 domain	AP2
UHGV-0072933_13	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0072933_16	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072933_16	PHROG	phrog_435	endolysin	lysis
UHGV-0072933_16	UniRef90	UniRef90_UPI0008DA62D1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072933_16	eggNOG-mapper	1151292.QEW_2091	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072933_16	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0072933_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072933_16	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0072933_17	PHROG	phrog_9829	NA	unknown function
UHGV-0072933_18	PHROG	phrog_13289	tail protein	tail
UHGV-0072933_18	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-0072933_18	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0072933_19	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0072933_19	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0072933_19	eggNOG-mapper	485916.Dtox_1961	PFAM Bacterial Ig-like domain (group 2)	NA
UHGV-0072933_19	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0072933_19	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0072933_20	PHROG	phrog_8687	tail protein with peptidase activity	other
UHGV-0072933_20	UniRef90	UniRef90_A0A1C5YGX2	Phage-related protein	NA
UHGV-0072933_20	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-0072933_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0072933_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0072933_20	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0072933_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0072933_21	UniRef90	UniRef90_A0A1C5YFZ9	Phage-related protein	NA
UHGV-0072933_21	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0072933_21	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0072933_22	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0072933_22	UniRef90	UniRef90_A0A316MAJ5	TMP_3 domain-containing protein	NA
UHGV-0072933_22	eggNOG-mapper	1292035.H476_1006	tape measure	NA
UHGV-0072933_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0072933_22	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0072933_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0072933_22	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0072933_24	UniRef90	UniRef90_Q3ABK0	Conserved domain protein	NA
UHGV-0072933_24	eggNOG-mapper	1031288.AXAA01000048_gene774	NA	NA
UHGV-0072933_25	PHROG	phrog_1407	major tail protein	tail
UHGV-0072933_25	UniRef90	UniRef90_UPI00077FFDF9	phage tail tube protein	NA
UHGV-0072933_25	eggNOG-mapper	1329516.JPST01000014_gene664	Phage tail tube protein	NA
UHGV-0072933_25	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0072933_25	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0072933_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0072933_26	eggNOG-mapper	1031288.AXAA01000048_gene772	NA	NA
UHGV-0072933_26	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0072933_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0072933_27	UniRef90	UniRef90_A0A2R4N3B8	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0072933_27	eggNOG-mapper	1031288.AXAA01000048_gene771	NA	NA
UHGV-0072933_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0072933_27	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-0072933_28	eggNOG-mapper	632518.Calow_0835	NA	NA
UHGV-0072933_28	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0072933_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0072933_29	eggNOG-mapper	632518.Calow_0834	NA	NA
UHGV-0072933_30	PHROG	phrog_2724	NA	unknown function
UHGV-0072933_30	UniRef90	UniRef90_A0A316MDU0	HeH domain-containing protein	NA
UHGV-0072933_30	eggNOG-mapper	946077.W5A_01875	This protein binds to 23S rRNA in the presence of protein L20	NA
UHGV-0072933_30	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0072933_30	COG	COG0261	Ribosomal protein L21	NA
UHGV-0072933_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0072933_31	UniRef90	UniRef90_A0A0B3VTN0	Capsid protein	NA
UHGV-0072933_31	eggNOG-mapper	1280689.AUJC01000003_gene967	NA	NA
UHGV-0072933_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0072933_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072933_32	UniRef90	UniRef90_UPI00068F2B69	phage scaffolding protein	NA
UHGV-0072933_32	eggNOG-mapper	1462526.BN990_03874	Phage minor structural protein GP20	NA
UHGV-0072933_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072933_32	Structural annotation	PF06810	NA	NA
UHGV-0072933_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072933_33	UniRef90	UniRef90_A0A316M9S4	Phage capsid protein	NA
UHGV-0072933_33	eggNOG-mapper	86416.Clopa_2539	Phage minor capsid protein 2	NA
UHGV-0072933_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072933_34	PHROG	phrog_1048	NA	unknown function
UHGV-0072933_34	UniRef90	UniRef90_A0A446IFA5	NA	NA
UHGV-0072933_34	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-0072933_34	Pfam	PF11195	NA	DUF2829
UHGV-0072933_34	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0072933_34	Structural annotation	PF11195	NA	NA
UHGV-0072933_35	PHROG	phrog_918	NA	unknown function
UHGV-0072933_35	UniRef90	UniRef90_UPI0008D94115	NA	NA
UHGV-0072933_35	eggNOG-mapper	888055.HMPREF9015_01979	NA	NA
UHGV-0072933_35	Pfam	PF19791	NA	DUF6275
UHGV-0072933_35	Structural annotation	PF19791	NA	NA
UHGV-0072933_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0072933_36	UniRef90	UniRef90_A0A316MBD0	Phage portal protein	NA
UHGV-0072933_36	eggNOG-mapper	86416.Clopa_3381	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0072933_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0072933_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0072933_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072933_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0072933_37	UniRef90	UniRef90_UPI001D019219	PBSX family phage terminase large subunit	NA
UHGV-0072933_37	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0072933_37	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072933_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0072933_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0072933_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0072933_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072933_37	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA