UHGV-0072964

Genome information

vOTU vOTU-019881

Genome length 39,894 bps

CDS count 53

Completeness 86.72% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072964
vOTU ID	vOTU-019881
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120369
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.23
Jumbo phage	No

Genome content
Genome length	39,894 bps
GC content	42.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.41%
Average CDS length	690.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072964_2	UniRef90	UniRef90_A0A353GN22	TraY domain-containing protein	NA
UHGV-0072964_2	eggNOG-mapper	1122947.FR7_3735	NA	NA
UHGV-0072964_2	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0072964_2	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0072964_3	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0072964_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0072964_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0072964_4	UniRef90	UniRef90_UPI00041EF200	phage antirepressor	NA
UHGV-0072964_4	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0072964_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0072964_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0072964_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0072964_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0072964_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072964_9	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0072964_9	eggNOG-mapper	706434.HMPREF9429_00770	YqaJ viral recombinase family protein	NA
UHGV-0072964_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0072964_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0072964_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0072964_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0072964_10	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072964_10	UniRef90	UniRef90_A0A265Q747	AP2/ERF domain-containing protein	NA
UHGV-0072964_10	eggNOG-mapper	1410624.JNKK01000065_gene1264	NA	NA
UHGV-0072964_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0072964_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0072964_11	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0072964_11	eggNOG-mapper	1196028.ALEF01000043_gene487	RecT family	NA
UHGV-0072964_11	Pfam	PF03837	RecT family	RecT
UHGV-0072964_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0072964_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0072964_11	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0072964_13	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0072964_13	UniRef90	UniRef90_UPI0012B90E86	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0072964_13	eggNOG-mapper	457412.RSAG_04664	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0072964_13	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0072964_13	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0072964_13	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0072964_13	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0072964_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072964_15	eggNOG-mapper	411467.BACCAP_02633	NA	NA
UHGV-0072964_16	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-0072964_16	PHROG	phrog_923	NA	unknown function
UHGV-0072964_16	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0072964_16	Structural annotation	PF13599, NF033086, COG1357	NA	NA
UHGV-0072964_19	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0072964_19	UniRef90	UniRef90_UPI00156E6FB9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0072964_19	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0072964_19	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0072964_19	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0072964_19	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0072964_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0072964_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0072964_22	UniRef90	UniRef90_A0A1Q6R563	Single-stranded DNA-binding protein	NA
UHGV-0072964_22	eggNOG-mapper	1262915.BN574_00939	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0072964_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0072964_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0072964_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0072964_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0072964_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0072964_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0072964_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0072964_23	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0072964_23	eggNOG-mapper	1211814.CAPG01000074_gene3465	Endodeoxyribonuclease RusA	NA
UHGV-0072964_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0072964_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0072964_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0072964_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0072964_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0072964_24	UniRef90	UniRef90_A0A380K1I9	Single-stranded DNA-binding protein	NA
UHGV-0072964_24	eggNOG-mapper	1005705.HMPREF9967_1025	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0072964_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0072964_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0072964_26	PHROG	phrog_15863	NA	unknown function
UHGV-0072964_26	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-0072964_26	eggNOG-mapper	1121342.AUCO01000030_gene2587	DnaJ molecular chaperone homology domain	NA
UHGV-0072964_26	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0072964_26	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0072964_28	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0072964_29	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-0072964_29	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0072964_29	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0072964_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072964_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0072964_31	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0072964_31	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-0072964_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0072964_31	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0072964_31	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0072964_33	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0072964_33	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0072964_33	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0072964_33	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0072964_33	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0072964_34	PHROG	phrog_528	NA	unknown function
UHGV-0072964_34	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0072964_35	PHROG	phrog_458	protease	other
UHGV-0072964_35	UniRef90	UniRef90_A0A6J7W824	Putative protease	NA
UHGV-0072964_35	eggNOG-mapper	1122963.AUHB01000017_gene1956	NA	NA
UHGV-0072964_36	PHROG	phrog_212	major head protein	head and packaging
UHGV-0072964_36	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-0072964_36	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0072964_36	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0072964_36	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0072964_37	PHROG	phrog_427	NA	unknown function
UHGV-0072964_37	Structural annotation	PF21190	NA	NA
UHGV-0072964_39	PHROG	phrog_394	tail protein	tail
UHGV-0072964_39	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0072964_39	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0072964_39	Structural annotation	PF17212	NA	NA
UHGV-0072964_40	PHROG	phrog_376	tail protein	tail
UHGV-0072964_40	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0072964_40	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0072964_41	PHROG	phrog_376	tail protein	tail
UHGV-0072964_41	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0072964_41	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0072964_41	Structural annotation	PF04053, PF13157, MF_03056, NF038015, COG2706	NA	NA
UHGV-0072964_42	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0072964_42	eggNOG-mapper	1217713.F993_01655	NA	NA
UHGV-0072964_42	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0072964_42	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0072964_43	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0072964_43	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0072964_43	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-0072964_44	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0072964_44	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-0072964_44	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0072964_45	PHROG	phrog_9880	NA	unknown function
UHGV-0072964_45	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0072964_45	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0072964_45	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0072964_46	PHROG	phrog_1640	tail protein	tail
UHGV-0072964_47	PHROG	phrog_2837	tail protein	tail
UHGV-0072964_47	UniRef90	UniRef90_UPI001032C079	NA	NA
UHGV-0072964_47	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0072964_47	Pfam	PF14301	NA	DUF4376
UHGV-0072964_47	Structural annotation	PF14301	NA	NA
UHGV-0072964_51	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072964_51	PHROG	phrog_435	endolysin	lysis
UHGV-0072964_51	UniRef90	UniRef90_UPI000F0CFF53	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072964_51	eggNOG-mapper	591001.Acfer_1125	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072964_51	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0072964_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072964_51	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA