UHGV-0072990

Genome information

Genome length 18,162 bps

CDS count 25

Completeness 92.94% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072990
vOTU ID	vOTU-011207
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_110628
BioSample	SAMEA2579952
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.19
Jumbo phage	No

Genome content
Genome length	18,162 bps
GC content	39.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	95.28%
Average CDS length	696.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072990_1	UniRef90	UniRef90_Q37987	Orf3 protein	NA
UHGV-0072990_2	PHROG	phrog_26145	NA	unknown function
UHGV-0072990_2	UniRef90	UniRef90_Q37988	Terminal protein	NA
UHGV-0072990_3	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0072990_3	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0072990_3	UniRef90	UniRef90_Q37989	DNA polymerase	NA
UHGV-0072990_3	eggNOG-mapper	10747.DPOL_BPCP1	nucleotide binding	NA
UHGV-0072990_3	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0072990_3	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0072990_4	PHROG	phrog_26305	NA	unknown function
UHGV-0072990_5	PHROG	phrog_22891	NA	unknown function
UHGV-0072990_5	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0072990_6	PHROG	phrog_25389	NA	unknown function
UHGV-0072990_6	UniRef90	UniRef90_Q37992	Possible scaffolding protein	NA
UHGV-0072990_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0072990_8	UniRef90	UniRef90_Q37993	Major capsid protein	NA
UHGV-0072990_8	eggNOG-mapper	1498213.A0A0B4MZH3_BPCP1	T=13 icosahedral viral capsid	NA
UHGV-0072990_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0072990_9	PHROG	phrog_2038	upper collar connector	connector
UHGV-0072990_9	UniRef90	UniRef90_A0A0B4MYX5	Connector protein	NA
UHGV-0072990_9	eggNOG-mapper	10747.Q37995_BPCP1	Phage Connector (GP10)	NA
UHGV-0072990_9	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0072990_9	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0072990_10	PHROG	phrog_26520	lower collar	tail
UHGV-0072990_10	UniRef90	UniRef90_Q37996	Collar protein	NA
UHGV-0072990_11	PHROG	phrog_27791	NA	unknown function
UHGV-0072990_12	PHROG	phrog_23584	NA	unknown function
UHGV-0072990_12	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0072990_13	PHROG	phrog_35592	NA	unknown function
UHGV-0072990_14	PHROG	phrog_17155	NA	unknown function
UHGV-0072990_14	UniRef90	UniRef90_Q38000	Orf15 protein	NA
UHGV-0072990_14	eggNOG-mapper	1158612.I580_02491	NA	NA
UHGV-0072990_15	PHROG	phrog_15030	NA	unknown function
UHGV-0072990_15	eggNOG-mapper	10747.Q38002_BPCP1	NA	NA
UHGV-0072990_15	Structural annotation	PF18220, COG2967	NA	NA
UHGV-0072990_16	PHROG	phrog_30532	tail protein	tail
UHGV-0072990_16	UniRef90	UniRef90_A0A0B4MZC4	Tail protein	NA
UHGV-0072990_16	eggNOG-mapper	1498213.A0A0B4MZC4_BPCP1	NA	NA
UHGV-0072990_16	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0072990_16	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0072990_17	PHROG	phrog_2248	tail protein	tail
UHGV-0072990_17	UniRef90	UniRef90_Q38005	Tail protein	NA
UHGV-0072990_17	eggNOG-mapper	936154.STP_1284	NA	NA
UHGV-0072990_17	Pfam	PF05257	CHAP domain	CHAP
UHGV-0072990_17	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0072990_17	COG	COG4926	Phage-related protein	NA
UHGV-0072990_17	Structural annotation	PF20934, NF011238, COG3942	NA	NA
UHGV-0072990_18	PHROG	phrog_2150	terminase	head and packaging
UHGV-0072990_18	UniRef90	UniRef90_Q38007	Encapsidation protein	NA
UHGV-0072990_18	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0072990_18	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0072990_18	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072990_19	PHROG	phrog_199	holin	lysis
UHGV-0072990_19	UniRef90	UniRef90_Q38008	Holin	NA
UHGV-0072990_19	eggNOG-mapper	10747.VLYS_BPCP1	Pfam:Phage_holin_4_1	NA
UHGV-0072990_19	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0072990_19	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0072990_19	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0072990_20	KOfam	K07273	acm; lysozyme	NA
UHGV-0072990_20	PHROG	phrog_6219	endolysin	lysis
UHGV-0072990_20	UniRef90	UniRef90_P19385	Lysozyme	NA
UHGV-0072990_20	eggNOG-mapper	1095737.HMPREF1110_1753	Glycosyl hydrolases family 25	NA
UHGV-0072990_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0072990_20	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0072990_20	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0072990_20	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0072990_22	PHROG	phrog_1027	NA	unknown function
UHGV-0072990_23	PHROG	phrog_29520	NA	unknown function
UHGV-0072990_24	PHROG	phrog_27339	NA	unknown function
UHGV-0072990_25	UniRef90	UniRef90_Q38012	Orfa protein	NA