UHGV-0073033

Genome information

Genome length 22,821 bps

CDS count 33

Completeness 66.89% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073033
vOTU ID	vOTU-018388
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_136623
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.04
Jumbo phage	No

Genome content
Genome length	22,821 bps
GC content	48.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	91.85%
Average CDS length	637.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073033_2	PHROG	phrog_8684	NA	unknown function
UHGV-0073033_2	UniRef90	UniRef90_A0A1C6FNR2	YopX protein	NA
UHGV-0073033_2	eggNOG-mapper	742767.HMPREF9456_03352	YopX protein	NA
UHGV-0073033_2	Pfam	PF09643	YopX protein	YopX
UHGV-0073033_2	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0073033_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0073033_3	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0073033_3	eggNOG-mapper	1265507.KB899636_gene1634	NA	NA
UHGV-0073033_3	Pfam	PF07374	NA	DUF1492
UHGV-0073033_3	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0073033_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0073033_4	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0073033_4	UniRef90	UniRef90_A0A1C6FN08	Terminase small subunit	NA
UHGV-0073033_4	eggNOG-mapper	469618.FVAG_01302	Terminase small subunit	NA
UHGV-0073033_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0073033_4	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0073033_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073033_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0073033_5	UniRef90	UniRef90_A0A1C6FMV1	Phage terminase, large subunit, PBSX family	NA
UHGV-0073033_5	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0073033_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0073033_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0073033_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073033_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0073033_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0073033_6	UniRef90	UniRef90_A0A1C6DY21	Phage portal protein, putative, A118 family	NA
UHGV-0073033_6	eggNOG-mapper	997296.PB1_16244	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0073033_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0073033_6	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0073033_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0073033_7	UniRef90	UniRef90_A0A1C6FMR4	Phage minor capsid protein 2	NA
UHGV-0073033_7	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0073033_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0073033_7	COG	COG2369	NA	NA
UHGV-0073033_7	Structural annotation	PF06152	NA	NA
UHGV-0073033_8	PHROG	phrog_15041	NA	unknown function
UHGV-0073033_8	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0073033_8	Structural annotation	PF10827	NA	NA
UHGV-0073033_9	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0073033_9	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0073033_9	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0073033_10	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0073033_10	UniRef90	UniRef90_UPI001896BA3C	ORF6N domain-containing protein	NA
UHGV-0073033_10	eggNOG-mapper	397290.C810_01421	ORF6C domain	NA
UHGV-0073033_10	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0073033_10	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0073033_11	UniRef90	UniRef90_A0A373KVZ7	CopG family transcriptional regulator	NA
UHGV-0073033_11	eggNOG-mapper	1235800.C819_00894	NA	NA
UHGV-0073033_11	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0073033_11	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0073033_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0073033_12	UniRef90	UniRef90_UPI000688A384	Bro-N domain-containing protein	NA
UHGV-0073033_12	eggNOG-mapper	1121428.DESHY_10043___1	BRO family, N-terminal domain	NA
UHGV-0073033_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0073033_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0073033_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0073033_13	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0073033_13	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0073033_14	PHROG	phrog_267	major head protein	head and packaging
UHGV-0073033_14	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0073033_14	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0073033_14	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0073033_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0073033_16	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0073033_16	UniRef90	UniRef90_A0A1C6GM46	Minor capsid protein	NA
UHGV-0073033_16	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0073033_16	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0073033_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0073033_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0073033_17	UniRef90	UniRef90_A0A355V0F3	Minor capsid protein	NA
UHGV-0073033_17	eggNOG-mapper	1295642.H839_08329	Minor capsid protein	NA
UHGV-0073033_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0073033_17	Structural annotation	PF11114	NA	NA
UHGV-0073033_18	Structural annotation	PF08873	NA	NA
UHGV-0073033_19	PHROG	phrog_820	major tail protein	tail
UHGV-0073033_19	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0073033_19	eggNOG-mapper	663278.Ethha_0099	NA	NA
UHGV-0073033_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0073033_20	eggNOG-mapper	536233.CLO_0892	NA	NA
UHGV-0073033_20	Structural annotation	PF10666	NA	NA
UHGV-0073033_21	PHROG	phrog_706	NA	unknown function
UHGV-0073033_21	UniRef90	UniRef90_A0A1C6GMP1	Bacteriophage Gp15 protein	NA
UHGV-0073033_21	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0073033_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0073033_21	Structural annotation	PF06854	NA	NA
UHGV-0073033_22	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0073033_22	UniRef90	UniRef90_A0A1C6GMQ4	Phage-related protein	NA
UHGV-0073033_22	eggNOG-mapper	1504822.CCNO01000012_gene489	phage tail tape measure protein	NA
UHGV-0073033_22	COG	COG5412	Phage-related protein	NA
UHGV-0073033_23	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0073033_24	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0073033_27	Structural annotation	PF21621	NA	NA
UHGV-0073033_30	PHROG	phrog_419	NA	unknown function
UHGV-0073033_30	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0073033_30	eggNOG-mapper	596323.HMPREF0554_0262	NA	NA
UHGV-0073033_31	UniRef90	UniRef90_A0A1C6GMR6	NlpC/P60 family	NA
UHGV-0073033_31	eggNOG-mapper	693746.OBV_08990	NLP P60 protein	NA
UHGV-0073033_31	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0073033_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0073033_31	Structural annotation	PF05382, PF08239, NF033743, COG0791	NA	NA
UHGV-0073033_32	PHROG	phrog_199	holin	lysis
UHGV-0073033_32	UniRef90	UniRef90_A0A1C6GMZ1	Phage-related holin (Lysis protein)	NA
UHGV-0073033_32	eggNOG-mapper	1120746.CCNL01000017_gene2574	toxin secretion phage lysis holin	NA
UHGV-0073033_32	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0073033_32	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0073033_32	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0073033_32	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0073033_33	eggNOG-mapper	471874.PROSTU_01441	NA	NA