UHGV-0073123

Genome information

Genome length 36,624 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073123
vOTU ID	vOTU-014709
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_129700
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.51
Jumbo phage	No

Genome content
Genome length	36,624 bps
GC content	52.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	87.34%
Average CDS length	553.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073123_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073123_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073123_1	UniRef90	UniRef90_A0A316LWM4	Transcriptional regulator	NA
UHGV-0073123_1	eggNOG-mapper	994573.T472_0204860	Helix-turn-helix domain	NA
UHGV-0073123_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0073123_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073123_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0073123_6	PHROG	phrog_199	holin	lysis
UHGV-0073123_6	UniRef90	UniRef90_A0A316PI30	Holin	NA
UHGV-0073123_6	eggNOG-mapper	580327.Tthe_0809	Bacteriophage holin family	NA
UHGV-0073123_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0073123_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0073123_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0073123_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0073123_7	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0073123_7	PHROG	phrog_329	minor tail protein	tail
UHGV-0073123_7	UniRef90	UniRef90_A0A316PD96	NlpC/P60 domain-containing protein	NA
UHGV-0073123_7	eggNOG-mapper	1089546.AQUI01000002_gene3251	NlpC/P60 family	NA
UHGV-0073123_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0073123_7	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0073123_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0073123_7	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0073123_8	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0073123_8	Structural annotation	PF12988	NA	NA
UHGV-0073123_9	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0073123_9	COG	COG3325	Chitinase, GH18 family	NA
UHGV-0073123_11	eggNOG-mapper	478749.BRYFOR_05053	extracellular matrix structural constituent	NA
UHGV-0073123_11	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0073123_11	COG	COG1361	S-layer protein MJ0795, predicted component of type IV pili-like system	NA
UHGV-0073123_12	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-0073123_13	PHROG	phrog_13589	NA	unknown function
UHGV-0073123_13	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0073123_14	PHROG	phrog_31538	NA	unknown function
UHGV-0073123_15	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0073123_16	PHROG	phrog_26795	NA	unknown function
UHGV-0073123_16	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0073123_16	eggNOG-mapper	714083.JH370377_gene1317	NA	NA
UHGV-0073123_16	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0073123_17	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0073123_17	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0073123_17	eggNOG-mapper	642492.Clole_0981	NA	NA
UHGV-0073123_17	Pfam	PF19789	NA	DUF6273
UHGV-0073123_17	Structural annotation	PF19077, PF06199, PF16794, PF08329, MF_04116, NF040520, COG3401, COG3499	NA	NA
UHGV-0073123_18	PHROG	phrog_13338	NA	unknown function
UHGV-0073123_18	UniRef90	UniRef90_A3DFW3	Tail tape measure protein TP901 core region	NA
UHGV-0073123_18	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0073123_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0073123_18	Structural annotation	PF20155	NA	NA
UHGV-0073123_19	Structural annotation	PF11836	NA	NA
UHGV-0073123_20	PHROG	phrog_88	major tail protein	tail
UHGV-0073123_20	UniRef90	UniRef90_R9KS65	Phi13 family phage major tail protein	NA
UHGV-0073123_20	eggNOG-mapper	1235793.C809_01925	phage major tail protein, phi13 family	NA
UHGV-0073123_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0073123_20	COG	COG5492	NA	NA
UHGV-0073123_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0073123_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0073123_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0073123_21	Structural annotation	TIGR01725	NA	NA
UHGV-0073123_22	eggNOG-mapper	1286171.EAL2_c19580	NA	NA
UHGV-0073123_22	Structural annotation	PF05657	NA	NA
UHGV-0073123_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-0073123_23	UniRef90	UniRef90_UPI00164B7AD3	phage head closure protein	NA
UHGV-0073123_23	eggNOG-mapper	1408422.JHYF01000021_gene977	head-tail adaptor	NA
UHGV-0073123_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0073123_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0073123_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0073123_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0073123_24	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0073123_24	UniRef90	UniRef90_A0A1V5NXG6	Phage gp6-like head-tail connector protein	NA
UHGV-0073123_24	eggNOG-mapper	1449126.JQKL01000051_gene3168	Phage gp6-like head-tail connector protein	NA
UHGV-0073123_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0073123_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0073123_24	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0073123_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0073123_25	UniRef90	UniRef90_UPI00164C0871	phage major capsid protein	NA
UHGV-0073123_25	eggNOG-mapper	1121324.CLIT_8c00760	phage major capsid protein, HK97 family	NA
UHGV-0073123_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0073123_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0073123_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0073123_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0073123_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0073123_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0073123_26	UniRef90	UniRef90_A0A1V5WAY6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0073123_26	eggNOG-mapper	748727.CLJU_c03550	Belongs to the peptidase S14 family	NA
UHGV-0073123_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0073123_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0073123_26	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0073123_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0073123_27	UniRef90	UniRef90_A0A1V5WBB3	Phage portal protein	NA
UHGV-0073123_27	eggNOG-mapper	1410624.JNKK01000017_gene1975	Phage portal protein	NA
UHGV-0073123_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0073123_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0073123_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0073123_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0073123_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0073123_28	UniRef90	UniRef90_UPI00164ABF0B	terminase large subunit	NA
UHGV-0073123_28	eggNOG-mapper	1122919.KB905559_gene1359	Terminase	NA
UHGV-0073123_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0073123_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0073123_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0073123_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0073123_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0073123_29	UniRef90	UniRef90_UPI0003615350	phage terminase small subunit P27 family	NA
UHGV-0073123_29	eggNOG-mapper	439292.Bsel_0787	Phage terminase small Subunit	NA
UHGV-0073123_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0073123_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0073123_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0073123_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073123_30	UniRef90	UniRef90_A0A1M5WHB2	5-methylcytosine-specific restriction enzyme A	NA
UHGV-0073123_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0073123_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0073123_31	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0073123_32	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0073123_32	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0073123_32	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0073123_32	Structural annotation	COG1694	NA	NA
UHGV-0073123_33	Pfam	PF20037	NA	DUF6440
UHGV-0073123_33	Structural annotation	PF20037	NA	NA
UHGV-0073123_34	PHROG	phrog_2164	NA	unknown function
UHGV-0073123_35	PHROG	phrog_7704	NA	unknown function
UHGV-0073123_35	UniRef90	UniRef90_A0A1V3J6L9	NA	NA
UHGV-0073123_35	Pfam	PF04448	NA	DUF551
UHGV-0073123_35	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0073123_36	PHROG	phrog_2081	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073123_39	PHROG	phrog_38832	NA	unknown function
UHGV-0073123_39	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0073123_39	Structural annotation	PF18358	NA	NA
UHGV-0073123_40	PHROG	phrog_824	NA	unknown function
UHGV-0073123_40	UniRef90	UniRef90_A0A8E1RF49	Nuclease	NA
UHGV-0073123_40	eggNOG-mapper	411470.RUMGNA_02049	VRR-NUC domain	NA
UHGV-0073123_41	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0073123_41	UniRef90	UniRef90_D4K5C7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0073123_41	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0073123_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0073123_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0073123_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0073123_42	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0073123_42	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0073123_44	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0073123_44	UniRef90	UniRef90_A0A3Q9R5Q7	Coil containing protein	NA
UHGV-0073123_44	eggNOG-mapper	642492.Clole_1831	Helix-turn-helix domain	NA
UHGV-0073123_44	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0073123_44	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0073123_44	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0073123_44	Structural annotation	PF09524, TIGR02220	NA	NA
UHGV-0073123_45	PHROG	phrog_24368	NA	unknown function
UHGV-0073123_46	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0073123_46	Pfam	PF19789	NA	DUF6273
UHGV-0073123_46	Structural annotation	PF19789	NA	NA
UHGV-0073123_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0073123_50	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0073123_50	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073123_50	UniRef90	UniRef90_UPI00082FB90B	HNH endonuclease	NA
UHGV-0073123_50	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0073123_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0073123_51	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0073123_51	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0073123_51	Pfam	PF19789	NA	DUF6273
UHGV-0073123_51	Structural annotation	PF19789	NA	NA
UHGV-0073123_52	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0073123_54	eggNOG-mapper	663952.SDD27957_09355	NA	NA
UHGV-0073123_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0073123_54	Structural annotation	PF21291, NF041951, COG3655	NA	NA
UHGV-0073123_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073123_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073123_55	UniRef90	UniRef90_A0A8J7KXE1	Helix-turn-helix domain-containing protein	NA
UHGV-0073123_55	eggNOG-mapper	1034347.CAHJ01000051_gene31	Helix-turn-helix domain protein	NA
UHGV-0073123_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073123_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0073123_56	eggNOG-mapper	663278.Ethha_2212	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0073123_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073123_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0073123_57	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0073123_57	PHROG	phrog_10292	NA	unknown function
UHGV-0073123_57	UniRef90	UniRef90_A0A1I6JRB5	TM2 domain-containing protein	NA
UHGV-0073123_57	eggNOG-mapper	1033810.HLPCO_001631	TM2 domain	NA
UHGV-0073123_57	Pfam	PF05154	TM2 domain	TM2
UHGV-0073123_57	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0073123_57	COG	COG2314	NA	NA
UHGV-0073123_58	KOfam	K14059	int; integrase	NA
UHGV-0073123_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0073123_58	UniRef90	UniRef90_R6M673	Putative integrase-phage associated	NA
UHGV-0073123_58	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0073123_58	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0073123_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0073123_58	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0073123_58	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA