UHGV-0073309

Genome information

Genome length 43,887 bps

CDS count 72

Completeness 98.37% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073309
vOTU ID	vOTU-075558
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_135096
BioSample	SAMEA2737776
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.21
Jumbo phage	No

Genome content
Genome length	43,887 bps
GC content	54.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	88.89%
Average CDS length	545.67 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073309_2	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0073309_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0073309_3	PHROG	phrog_16490	NA	unknown function
UHGV-0073309_3	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0073309_4	PHROG	phrog_22984	NA	unknown function
UHGV-0073309_6	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0073309_6	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0073309_9	PHROG	phrog_15303	NA	unknown function
UHGV-0073309_10	PHROG	phrog_4105	NA	unknown function
UHGV-0073309_10	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0073309_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0073309_11	PHROG	phrog_291	endolysin	lysis
UHGV-0073309_11	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0073309_11	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0073309_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0073309_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0073309_11	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0073309_12	PHROG	phrog_28526	NA	unknown function
UHGV-0073309_12	UniRef90	UniRef90_A0A415D4T1	NA	NA
UHGV-0073309_12	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0073309_12	Pfam	PF04255	NA	DUF433
UHGV-0073309_14	PHROG	phrog_6465	tail protein	tail
UHGV-0073309_14	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0073309_14	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0073309_14	Structural annotation	COG4675	NA	NA
UHGV-0073309_15	PHROG	phrog_23587	NA	unknown function
UHGV-0073309_15	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0073309_15	COG	COG5492	NA	NA
UHGV-0073309_16	PHROG	phrog_521	tail protein	tail
UHGV-0073309_16	UniRef90	UniRef90_UPI0012DF3082	NA	NA
UHGV-0073309_16	eggNOG-mapper	742738.HMPREF9460_02532	NA	NA
UHGV-0073309_16	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0073309_16	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0073309_16	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0073309_17	PHROG	phrog_6	baseplate protein	tail
UHGV-0073309_17	UniRef90	UniRef90_UPI0012DC9D54	baseplate J/gp47 family protein	NA
UHGV-0073309_17	eggNOG-mapper	742738.HMPREF9460_02531	Baseplate J-like protein	NA
UHGV-0073309_17	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0073309_17	COG	COG3299	NA	NA
UHGV-0073309_17	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0073309_18	PHROG	phrog_120	baseplate protein	tail
UHGV-0073309_18	UniRef90	UniRef90_UPI0012DC353B	NA	NA
UHGV-0073309_18	eggNOG-mapper	742738.HMPREF9460_02530	NA	NA
UHGV-0073309_18	Pfam	PF10934	NA	DUF2634
UHGV-0073309_18	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0073309_18	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0073309_19	PHROG	phrog_579	NA	unknown function
UHGV-0073309_19	UniRef90	UniRef90_UPI0012DC9308	NA	NA
UHGV-0073309_19	Pfam	PF10844	NA	DUF2577
UHGV-0073309_19	Structural annotation	PF10844	NA	NA
UHGV-0073309_20	PHROG	phrog_400	tail protein	tail
UHGV-0073309_20	eggNOG-mapper	742738.HMPREF9460_02528	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0073309_20	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0073309_20	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0073309_21	PHROG	phrog_380	endolysin	lysis
UHGV-0073309_21	UniRef90	UniRef90_A0A212J4L5	Putative Phage-like element PBSX protein XkdP	NA
UHGV-0073309_21	eggNOG-mapper	742738.HMPREF9460_02527	LysM domain	NA
UHGV-0073309_21	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0073309_21	Structural annotation	PF21821, PF14603, MF_00613, TIGR02126, COG3499, COG3103	NA	NA
UHGV-0073309_22	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0073309_22	UniRef90	UniRef90_UPI0012DBDA0E	tape measure protein	NA
UHGV-0073309_22	eggNOG-mapper	742738.HMPREF9460_02526	tape measure	NA
UHGV-0073309_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0073309_22	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0073309_22	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0073309_22	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0073309_23	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0073309_23	UniRef90	UniRef90_UPI0012DFD344	phage portal protein	NA
UHGV-0073309_23	eggNOG-mapper	742738.HMPREF9460_02524	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0073309_23	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0073309_23	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0073309_24	PHROG	phrog_365	tail protein	tail
UHGV-0073309_24	UniRef90	UniRef90_UPI001D0EDD9D	phage tail tube protein	NA
UHGV-0073309_24	eggNOG-mapper	742738.HMPREF9460_02523	Phage tail tube protein	NA
UHGV-0073309_24	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0073309_24	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0073309_25	PHROG	phrog_279	tail sheath	tail
UHGV-0073309_25	UniRef90	UniRef90_UPI0012DC5534	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0073309_25	eggNOG-mapper	742738.HMPREF9460_02522	Phage tail sheath C-terminal domain	NA
UHGV-0073309_25	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0073309_25	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0073309_25	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0073309_25	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0073309_26	PHROG	phrog_30826	NA	unknown function
UHGV-0073309_27	PHROG	phrog_525	NA	unknown function
UHGV-0073309_27	eggNOG-mapper	398512.JQKC01000052_gene2664	NA	NA
UHGV-0073309_27	Pfam	PF20765	NA	DUF6838
UHGV-0073309_27	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0073309_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0073309_28	UniRef90	UniRef90_UPI0012DEF491	HK97 gp10 family phage protein	NA
UHGV-0073309_28	eggNOG-mapper	398512.JQKC01000052_gene2665	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0073309_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0073309_28	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0073309_29	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0073309_29	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0073309_30	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0073309_30	UniRef90	UniRef90_UPI0012DE5897	NA	NA
UHGV-0073309_30	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-0073309_30	Pfam	PF13262	NA	DUF4054
UHGV-0073309_30	Structural annotation	PF13262	NA	NA
UHGV-0073309_31	PHROG	phrog_29824	NA	unknown function
UHGV-0073309_32	PHROG	phrog_264	major head protein	head and packaging
UHGV-0073309_32	UniRef90	UniRef90_UPI0012DE3201	NA	NA
UHGV-0073309_32	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-0073309_32	Pfam	PF09950	NA	DUF2184
UHGV-0073309_32	COG	COG4834	NA	NA
UHGV-0073309_32	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0073309_33	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0073309_33	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-0073309_33	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-0073309_33	Structural annotation	PF09956	NA	NA
UHGV-0073309_34	KOfam	K09960	NA	NA
UHGV-0073309_34	PHROG	phrog_16985	NA	unknown function
UHGV-0073309_34	UniRef90	UniRef90_UPI0012DC3D4D	NA	NA
UHGV-0073309_34	eggNOG-mapper	742738.HMPREF9460_02512	NA	NA
UHGV-0073309_34	Pfam	PF09979	NA	DUF2213
UHGV-0073309_34	COG	COG3566	NA	NA
UHGV-0073309_34	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0073309_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0073309_35	UniRef90	UniRef90_UPI0012DFAA79	minor capsid protein	NA
UHGV-0073309_35	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-0073309_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0073309_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0073309_35	Structural annotation	PF06152	NA	NA
UHGV-0073309_36	KOfam	K09961	NA	NA
UHGV-0073309_36	PHROG	phrog_146	portal protein	head and packaging
UHGV-0073309_36	UniRef90	UniRef90_UPI0012DE312E	NA	NA
UHGV-0073309_36	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0073309_36	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0073309_36	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0073309_36	COG	COG3567	NA	NA
UHGV-0073309_36	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0073309_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073309_37	PHROG	phrog_10250	NA	unknown function
UHGV-0073309_37	UniRef90	UniRef90_UPI0012DD14DE	PBSX family phage terminase large subunit	NA
UHGV-0073309_37	eggNOG-mapper	742738.HMPREF9460_02505	Terminase-like family	NA
UHGV-0073309_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0073309_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0073309_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073309_37	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0073309_38	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0073309_38	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0073309_38	Structural annotation	PF13542	NA	NA
UHGV-0073309_40	PHROG	phrog_8680	NA	unknown function
UHGV-0073309_40	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0073309_40	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0073309_40	Pfam	PF14386	NA	DUF4417
UHGV-0073309_40	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0073309_40	Structural annotation	PF14386	NA	NA
UHGV-0073309_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0073309_42	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0073309_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0073309_43	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0073309_43	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0073309_43	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0073309_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0073309_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0073309_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0073309_44	PHROG	phrog_3136	NA	unknown function
UHGV-0073309_44	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0073309_44	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0073309_44	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0073309_44	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0073309_47	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073309_47	UniRef90	UniRef90_A0A329UES5	HNHc domain-containing protein	NA
UHGV-0073309_47	eggNOG-mapper	1291050.JAGE01000001_gene468	endonuclease activity	NA
UHGV-0073309_47	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0073309_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0073309_47	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0073309_49	UniRef90	UniRef90_UPI001C009709	NA	NA
UHGV-0073309_50	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0073309_51	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0073309_51	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-0073309_51	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0073309_51	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0073309_51	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0073309_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0073309_51	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0073309_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0073309_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0073309_52	UniRef90	UniRef90_UPI001C00AA91	single-stranded DNA-binding protein	NA
UHGV-0073309_52	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0073309_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0073309_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0073309_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0073309_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0073309_52	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0073309_53	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073309_53	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0073309_53	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0073309_53	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0073309_55	Structural annotation	PF06718	NA	NA
UHGV-0073309_57	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0073309_58	Structural annotation	PF14120	NA	NA
UHGV-0073309_59	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0073309_62	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0073309_62	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0073309_62	eggNOG-mapper	97137.C821_00091	ORF6C domain	NA
UHGV-0073309_62	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0073309_62	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0073309_62	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0073309_62	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0073309_62	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0073309_63	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0073309_64	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073309_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073309_64	UniRef90	UniRef90_UPI0012DC3E77	helix-turn-helix domain-containing protein	NA
UHGV-0073309_64	eggNOG-mapper	1123511.KB905843_gene986	sequence-specific DNA binding	NA
UHGV-0073309_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073309_64	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0073309_64	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0073309_65	UniRef90	UniRef90_A0A1Y3ZRE4	HTH cro/C1-type domain-containing protein	NA
UHGV-0073309_65	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0073309_65	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0073309_65	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0073309_68	UniRef90	UniRef90_UPI001D0DC7B2	zinc ribbon domain-containing protein	NA
UHGV-0073309_68	eggNOG-mapper	394503.Ccel_2974	NA	NA
UHGV-0073309_68	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0073309_71	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073309_71	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0073309_71	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0073309_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073309_71	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0073309_71	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0073309_72	KOfam	K14059	int; integrase	NA
UHGV-0073309_72	PHROG	phrog_1	integrase	integration and excision
UHGV-0073309_72	UniRef90	UniRef90_UPI0012DD7FDB	site-specific integrase	NA
UHGV-0073309_72	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0073309_72	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0073309_72	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0073309_72	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA