UHGV-0073350

Genome information

Genome length 34,494 bps

CDS count 59

Completeness 94.69% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073350
vOTU ID	vOTU-063414
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_121798
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.74
Jumbo phage	No

Genome content
Genome length	34,494 bps
GC content	32.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.76%
Average CDS length	552.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073350_1	KOfam	K14059	int; integrase	NA
UHGV-0073350_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0073350_1	UniRef90	UniRef90_A0A6N2YZN3	Transposase from transposon Tn916	NA
UHGV-0073350_1	eggNOG-mapper	226185.EF_2546	Phage integrase family	NA
UHGV-0073350_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0073350_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0073350_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0073350_2	PHROG	phrog_16230	replication protein	DNA, RNA and nucleotide metabolism
UHGV-0073350_2	UniRef90	UniRef90_Q8E9K9	Phage P1-related protein in restrction modification operon RflB	NA
UHGV-0073350_2	eggNOG-mapper	211586.SO_4262	NA	NA
UHGV-0073350_3	PHROG	phrog_3732	NA	unknown function
UHGV-0073350_3	UniRef90	UniRef90_UPI00142FF33D	NA	NA
UHGV-0073350_3	eggNOG-mapper	521460.Athe_2468	NA	NA
UHGV-0073350_3	Pfam	PF12686	NA	DUF3800
UHGV-0073350_3	Structural annotation	MF_00053, TIGR00729, COG1039	NA	NA
UHGV-0073350_4	PHROG	phrog_4431	NA	unknown function
UHGV-0073350_4	UniRef90	UniRef90_A0A3E3EFD1	SHOCT domain-containing protein	NA
UHGV-0073350_4	eggNOG-mapper	1449343.JQLQ01000002_gene1561	NA	NA
UHGV-0073350_4	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0073350_4	Structural annotation	PF05120	NA	NA
UHGV-0073350_5	eggNOG-mapper	658659.HMPREF0983_03305	NA	NA
UHGV-0073350_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0073350_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073350_6	UniRef90	UniRef90_A0A3E3EGN5	XRE family transcriptional regulator	NA
UHGV-0073350_6	eggNOG-mapper	697303.Thewi_2448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0073350_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073350_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0073350_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0073350_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0073350_9	PHROG	phrog_2113	NA	unknown function
UHGV-0073350_13	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0073350_13	UniRef90	UniRef90_A0A6N2YYW1	ERF superfamily protein	NA
UHGV-0073350_13	eggNOG-mapper	1522092.A0A090D840_9CAUD	ERF superfamily	NA
UHGV-0073350_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0073350_13	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0073350_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0073350_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0073350_15	UniRef90	UniRef90_A0A3E3EF61	Single-stranded DNA-binding protein	NA
UHGV-0073350_15	eggNOG-mapper	428126.CLOSPI_02450	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0073350_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0073350_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0073350_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0073350_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0073350_15	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0073350_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0073350_16	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0073350_16	Structural annotation	PF05772	NA	NA
UHGV-0073350_17	KOfam	K06940	NA	NA
UHGV-0073350_17	PHROG	phrog_32498	NA	unknown function
UHGV-0073350_17	UniRef90	UniRef90_A0A3E3EFD8	YkgJ family cysteine cluster protein	NA
UHGV-0073350_17	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0073350_17	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0073350_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0073350_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0073350_18	UniRef90	UniRef90_U3PDU0	Putative Holliday junction resolvase	NA
UHGV-0073350_18	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0073350_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0073350_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0073350_19	PHROG	phrog_7566	NA	unknown function
UHGV-0073350_19	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0073350_20	PHROG	phrog_1029	NA	unknown function
UHGV-0073350_20	eggNOG-mapper	445974.CLORAM_02952	NA	NA
UHGV-0073350_20	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0073350_21	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0073350_22	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0073350_22	UniRef90	UniRef90_A0A3E3EH62	POU-specific domain-containing protein	NA
UHGV-0073350_22	eggNOG-mapper	445974.CLORAM_02950	NA	NA
UHGV-0073350_23	PHROG	phrog_22292	NA	unknown function
UHGV-0073350_23	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-0073350_25	AcrCatalog	cluster_200940	NA	NA
UHGV-0073350_26	PHROG	phrog_419	NA	unknown function
UHGV-0073350_26	eggNOG-mapper	279010.BL00889	NA	NA
UHGV-0073350_26	Structural annotation	PF14083	NA	NA
UHGV-0073350_28	eggNOG-mapper	645991.Sgly_0337	NA	NA
UHGV-0073350_29	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0073350_31	eggNOG-mapper	1235799.C818_00262	NA	NA
UHGV-0073350_34	Structural annotation	COG5475	NA	NA
UHGV-0073350_39	UniRef90	UniRef90_A0A3E3EF98	Helix-turn-helix domain-containing protein	NA
UHGV-0073350_39	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0073350_39	Structural annotation	PF13542	NA	NA
UHGV-0073350_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073350_40	PHROG	phrog_10250	NA	unknown function
UHGV-0073350_40	UniRef90	UniRef90_A0A3E3EF96	PBSX family phage terminase large subunit	NA
UHGV-0073350_40	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0073350_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0073350_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0073350_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0073350_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073350_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0073350_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0073350_41	UniRef90	UniRef90_A0A3E3EF92	Phage portal protein	NA
UHGV-0073350_41	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0073350_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0073350_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0073350_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0073350_42	UniRef90	UniRef90_A0A023CQT0	Protein gp4	NA
UHGV-0073350_42	eggNOG-mapper	1232449.BAHV02000010_gene2710	NA	NA
UHGV-0073350_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0073350_42	COG	COG2369	NA	NA
UHGV-0073350_42	Structural annotation	PF06152	NA	NA
UHGV-0073350_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0073350_43	UniRef90	UniRef90_UPI00142FDD09	phage scaffolding protein	NA
UHGV-0073350_43	eggNOG-mapper	1158614.I592_01120	Phage minor structural protein GP20	NA
UHGV-0073350_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0073350_43	Structural annotation	PF06810	NA	NA
UHGV-0073350_44	PHROG	phrog_267	major head protein	head and packaging
UHGV-0073350_44	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0073350_44	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0073350_44	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0073350_44	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0073350_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0073350_46	PHROG	phrog_3366	NA	unknown function
UHGV-0073350_46	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0073350_46	Pfam	PF20536	NA	DUF6751
UHGV-0073350_46	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0073350_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0073350_47	UniRef90	UniRef90_A0A3E3EFA7	Capsid protein	NA
UHGV-0073350_47	eggNOG-mapper	663278.Ethha_0493	Minor capsid protein	NA
UHGV-0073350_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0073350_47	Structural annotation	PF11114	NA	NA
UHGV-0073350_48	PHROG	phrog_3266	tail completion	connector
UHGV-0073350_48	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0073350_48	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0073350_48	Structural annotation	PF12691	NA	NA
UHGV-0073350_49	PHROG	phrog_3099	NA	unknown function
UHGV-0073350_49	eggNOG-mapper	411468.CLOSCI_02404	NA	NA
UHGV-0073350_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0073350_50	PHROG	phrog_4450	NA	unknown function
UHGV-0073350_50	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0073350_50	Pfam	PF20378	NA	DUF6673
UHGV-0073350_50	Structural annotation	PF20378	NA	NA
UHGV-0073350_51	PHROG	phrog_706	NA	unknown function
UHGV-0073350_51	UniRef90	UniRef90_A0A1I0GR35	Bacteriophage Gp15 protein	NA
UHGV-0073350_51	eggNOG-mapper	428127.EUBDOL_01216	Bacteriophage Gp15 protein	NA
UHGV-0073350_51	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0073350_51	Structural annotation	PF06854	NA	NA
UHGV-0073350_52	eggNOG-mapper	411468.CLOSCI_02407	NA	NA
UHGV-0073350_53	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0073350_53	UniRef90	UniRef90_A0A3E3EFA4	Phage tail tape measure protein	NA
UHGV-0073350_53	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0073350_53	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0073350_53	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0073350_53	COG	COG5283	Phage-related tail protein	NA
UHGV-0073350_54	UniRef90	UniRef90_A0A1M4TQW2	Phage tail protein	NA
UHGV-0073350_54	eggNOG-mapper	1235792.C808_05378	NA	NA
UHGV-0073350_55	PHROG	phrog_3558	tail protein	tail
UHGV-0073350_55	UniRef90	UniRef90_A0A3E3EFD0	Peptidase S74 domain-containing protein	NA
UHGV-0073350_55	eggNOG-mapper	1235792.C808_00095	Prophage endopeptidase tail	NA
UHGV-0073350_55	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0073350_55	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0073350_55	COG	COG4926	Phage-related protein	NA
UHGV-0073350_55	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0073350_56	PHROG	phrog_24267	NA	unknown function
UHGV-0073350_56	eggNOG-mapper	553973.CLOHYLEM_06931	tail collar domain protein	NA
UHGV-0073350_56	COG	COG4675	Phage tail collar domain	NA
UHGV-0073350_56	Structural annotation	PF10651	NA	NA
UHGV-0073350_57	PHROG	phrog_33625	holin	lysis
UHGV-0073350_57	UniRef90	UniRef90_A0A6N3AF02	Bacteriophage holin	NA
UHGV-0073350_57	eggNOG-mapper	1196031.ALEG01000039_gene1391	Bacteriophage holin	NA
UHGV-0073350_57	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0073350_57	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0073350_57	COG	COG5546	NA	NA
UHGV-0073350_57	Structural annotation	COG5546	NA	NA
UHGV-0073350_59	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0073350_59	PHROG	phrog_3088	amidase	lysis
UHGV-0073350_59	UniRef90	UniRef90_UPI001C253586	SH3 domain-containing protein	NA
UHGV-0073350_59	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0073350_59	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0073350_59	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0073350_59	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA