UHGV-0073408

Genome information

Genome length 31,258 bps

CDS count 45

Completeness 88.84% (medium-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073408
vOTU ID	vOTU-035318
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_129632
BioSample	SAMEA2737809
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.26
Jumbo phage	No

Genome content
Genome length	31,258 bps
GC content	36.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.64%
Average CDS length	647.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073408_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073408_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073408_1	UniRef90	UniRef90_A0A3C1CUP1	HTH cro/C1-type domain-containing protein	NA
UHGV-0073408_1	eggNOG-mapper	588581.Cpap_0877	helix-turn-helix	NA
UHGV-0073408_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073408_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0073408_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0073408_2	PHROG	phrog_199	holin	lysis
UHGV-0073408_2	UniRef90	UniRef90_UPI00164BD6C2	phage holin family protein	NA
UHGV-0073408_2	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0073408_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0073408_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0073408_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0073408_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0073408_3	PHROG	phrog_918	NA	unknown function
UHGV-0073408_3	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-0073408_3	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0073408_3	Pfam	PF19791	NA	DUF6275
UHGV-0073408_3	Structural annotation	PF19791	NA	NA
UHGV-0073408_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0073408_4	PHROG	phrog_291	endolysin	lysis
UHGV-0073408_4	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0073408_4	eggNOG-mapper	1120933.ATUY01000002_gene158	lysozyme activity	NA
UHGV-0073408_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0073408_4	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0073408_4	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0073408_6	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0073408_6	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-0073408_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0073408_7	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0073408_7	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-0073408_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0073408_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0073408_7	COG	COG1511	NA	NA
UHGV-0073408_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0073408_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0073408_8	UniRef90	UniRef90_UPI00073F69EF	phage tail family protein	NA
UHGV-0073408_8	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0073408_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0073408_9	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0073408_9	PHROG	phrog_5218	NA	unknown function
UHGV-0073408_9	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0073408_9	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0073408_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0073408_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0073408_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0073408_11	Structural annotation	PF11836	NA	NA
UHGV-0073408_12	PHROG	phrog_88	major tail protein	tail
UHGV-0073408_12	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0073408_12	eggNOG-mapper	411470.RUMGNA_02319	COG NOG11304 non supervised orthologous group	NA
UHGV-0073408_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0073408_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0073408_13	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0073408_13	eggNOG-mapper	1118057.CAGX01000043_gene486	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0073408_13	Structural annotation	TIGR01725	NA	NA
UHGV-0073408_14	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0073408_14	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0073408_15	PHROG	phrog_19734	NA	unknown function
UHGV-0073408_15	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0073408_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0073408_16	PHROG	phrog_749	NA	unknown function
UHGV-0073408_16	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0073408_16	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0073408_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0073408_17	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0073408_17	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0073408_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0073408_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0073408_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0073408_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0073408_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0073408_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0073408_18	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0073408_18	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0073408_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0073408_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0073408_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0073408_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0073408_19	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0073408_19	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0073408_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0073408_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0073408_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0073408_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0073408_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0073408_20	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0073408_20	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0073408_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0073408_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0073408_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0073408_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0073408_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0073408_21	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-0073408_21	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0073408_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0073408_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0073408_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073408_22	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0073408_22	eggNOG-mapper	1123315.AUIP01000014_gene1945	HNH endonuclease	NA
UHGV-0073408_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0073408_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0073408_23	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0073408_23	Structural annotation	TIGR01636	NA	NA
UHGV-0073408_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0073408_24	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0073408_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0073408_26	PHROG	phrog_824	NA	unknown function
UHGV-0073408_26	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0073408_26	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0073408_26	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0073408_26	Structural annotation	PF08774	NA	NA
UHGV-0073408_27	PHROG	phrog_24518	NA	unknown function
UHGV-0073408_27	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0073408_29	PHROG	phrog_15609	NA	unknown function
UHGV-0073408_29	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0073408_29	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0073408_29	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0073408_30	PHROG	phrog_8470	NA	unknown function
UHGV-0073408_30	UniRef90	UniRef90_A0A1M7BII1	PcfJ-like protein	NA
UHGV-0073408_30	eggNOG-mapper	457412.RSAG_01172	PcfJ-like protein	NA
UHGV-0073408_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0073408_30	Structural annotation	PF14284	NA	NA
UHGV-0073408_31	PHROG	phrog_36399	NA	unknown function
UHGV-0073408_35	Structural annotation	COG1862	NA	NA
UHGV-0073408_36	UniRef90	UniRef90_UPI0005510EBF	helix-turn-helix domain-containing protein	NA
UHGV-0073408_37	PHROG	phrog_2232	NA	unknown function
UHGV-0073408_37	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0073408_37	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0073408_37	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0073408_37	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0073408_39	PHROG	phrog_585	NA	unknown function
UHGV-0073408_39	UniRef90	UniRef90_A0A851IGZ3	NA	NA
UHGV-0073408_39	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0073408_39	Pfam	PF10711	NA	DUF2513
UHGV-0073408_39	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0073408_42	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-0073408_42	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0073408_43	UniRef90	UniRef90_UPI00164B50E0	helix-turn-helix transcriptional regulator	NA
UHGV-0073408_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0073408_43	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0073408_44	PHROG	phrog_1914	NA	unknown function
UHGV-0073408_44	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0073408_44	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0073408_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0073408_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0073408_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0073408_45	PHROG	phrog_1847	NA	unknown function
UHGV-0073408_45	UniRef90	UniRef90_U2Q2K4	T5orf172 domain-containing protein	NA
UHGV-0073408_45	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0073408_45	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0073408_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0073408_45	Structural annotation	PF13250, NF041454	NA	NA