UHGV-0073409

Genome information

Genome length 45,508 bps

CDS count 73

Completeness 99.79% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073409
vOTU ID	vOTU-060864
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_129631
BioSample	SAMEA2737809
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.51
Jumbo phage	No

Genome content
Genome length	45,508 bps
GC content	49.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	88.64%
Average CDS length	554.71 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073409_1	eggNOG-mapper	1033732.CAHI01000009_gene1582	COG NOG27188 non supervised orthologous group	NA
UHGV-0073409_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0073409_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0073409_2	UniRef90	UniRef90_UPI0018735313	site-specific integrase	NA
UHGV-0073409_2	eggNOG-mapper	1433126.BN938_1066	Belongs to the 'phage' integrase family	NA
UHGV-0073409_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0073409_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0073409_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0073409_2	Structural annotation	PF00589, MF_01808, NF002331, COG4974	NA	NA
UHGV-0073409_6	Structural annotation	PF10628	NA	NA
UHGV-0073409_11	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0073409_11	eggNOG-mapper	445970.ALIPUT_01633	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0073409_11	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0073409_12	PHROG	phrog_15610	protease	other
UHGV-0073409_12	UniRef90	UniRef90_A0A0J6CFE9	Membrane protein	NA
UHGV-0073409_12	eggNOG-mapper	1347393.HG726024_gene2889	NA	NA
UHGV-0073409_13	PHROG	phrog_26448	NA	unknown function
UHGV-0073409_13	eggNOG-mapper	1122985.HMPREF1991_01566	NA	NA
UHGV-0073409_13	Pfam	PF20647	NA	DUF6808
UHGV-0073409_13	Structural annotation	PF20647	NA	NA
UHGV-0073409_14	PHROG	phrog_873	endolysin	head and packaging
UHGV-0073409_14	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0073409_14	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0073409_15	UniRef90	UniRef90_UPI0018A97727	phage holin family protein	NA
UHGV-0073409_15	eggNOG-mapper	445970.ALIPUT_01637	Bacteriophage holin family	NA
UHGV-0073409_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0073409_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0073409_19	PHROG	phrog_21217	NA	unknown function
UHGV-0073409_20	PHROG	phrog_14295	NA	unknown function
UHGV-0073409_20	eggNOG-mapper	1235803.C825_02656	NA	NA
UHGV-0073409_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0073409_21	PHROG	phrog_33698	NA	unknown function
UHGV-0073409_21	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-0073409_21	eggNOG-mapper	742767.HMPREF9456_03372	NA	NA
UHGV-0073409_21	Structural annotation	PF15006, NF041425, COG1470, COG4379	NA	NA
UHGV-0073409_22	Structural annotation	PF19266, TIGR02126, COG5437	NA	NA
UHGV-0073409_24	Structural annotation	PF05561	NA	NA
UHGV-0073409_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0073409_28	UniRef90	UniRef90_A0A1V5ID18	Phage capsid family protein	NA
UHGV-0073409_28	Structural annotation	PF05065, PF15188, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0073409_29	KOfam	K06904	NA	NA
UHGV-0073409_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0073409_29	UniRef90	UniRef90_UPI000B385EC9	HK97 family phage prohead protease	NA
UHGV-0073409_29	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0073409_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0073409_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0073409_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0073409_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0073409_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0073409_30	UniRef90	UniRef90_A0A8E4ZCV9	Portal protein	NA
UHGV-0073409_30	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0073409_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0073409_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0073409_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073409_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0073409_31	UniRef90	UniRef90_A0A497PCX3	Terminase	NA
UHGV-0073409_31	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-0073409_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0073409_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073409_31	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0073409_32	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0073409_32	UniRef90	UniRef90_A0A6J7X176	DNA-packaging protein gp3	NA
UHGV-0073409_32	eggNOG-mapper	266835.14021430	DNA-packaging protein gp3	NA
UHGV-0073409_32	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0073409_32	Structural annotation	PF16677	NA	NA
UHGV-0073409_33	PHROG	phrog_5783	NA	unknown function
UHGV-0073409_33	UniRef90	UniRef90_A0A143XLU0	NYN domain protein	NA
UHGV-0073409_33	eggNOG-mapper	1501391.LG35_06470	NYN domain	NA
UHGV-0073409_33	Pfam	PF01936	NYN domain	NYN
UHGV-0073409_33	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0073409_33	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0073409_34	UniRef90	UniRef90_A0A396MBG1	NA	NA
UHGV-0073409_34	eggNOG-mapper	445970.ALIPUT_01584	NA	NA
UHGV-0073409_34	Pfam	PF16476	NA	DUF5053
UHGV-0073409_34	Structural annotation	PF16476	NA	NA
UHGV-0073409_35	UniRef90	UniRef90_F0R799	Type III restriction protein res subunit	NA
UHGV-0073409_35	eggNOG-mapper	667015.Bacsa_2379	SPTR ArsR-family transcription regulator	NA
UHGV-0073409_36	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0073409_36	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073409_36	UniRef90	UniRef90_UPI0018ABC42E	type I restriction endonuclease	NA
UHGV-0073409_36	eggNOG-mapper	471854.Dfer_3124	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0073409_36	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0073409_36	COG	COG4748	NA	NA
UHGV-0073409_36	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0073409_37	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-0073409_37	Structural annotation	PF09629, MF_00749, TIGR00739, COG5475	NA	NA
UHGV-0073409_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073409_38	Structural annotation	NF010465, COG1476	NA	NA
UHGV-0073409_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073409_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073409_40	UniRef90	UniRef90_UPI001D0692D6	helix-turn-helix domain-containing protein	NA
UHGV-0073409_40	eggNOG-mapper	1122985.HMPREF1991_02233	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0073409_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073409_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0073409_40	Structural annotation	PF01381, NF007257, COG1476	NA	NA
UHGV-0073409_42	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0073409_42	UniRef90	UniRef90_A0A5B5VJJ0	Helix-turn-helix transcriptional regulator	NA
UHGV-0073409_42	eggNOG-mapper	1116472.MGMO_177c00100	helix_turn_helix, Lux Regulon	NA
UHGV-0073409_42	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0073409_42	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0073409_42	Structural annotation	PF00196, MF_00674, COG2771	NA	NA
UHGV-0073409_44	PHROG	phrog_4973	NA	unknown function
UHGV-0073409_44	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0073409_44	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0073409_51	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0073409_53	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0073409_53	UniRef90	UniRef90_UPI001C6361B5	recombinase RecT	NA
UHGV-0073409_53	eggNOG-mapper	1129145.H2BD49_9CAUD	DNA metabolic process	NA
UHGV-0073409_53	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0073409_54	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0073409_54	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073409_54	UniRef90	UniRef90_G5H8Z1	YqaJ domain-containing protein	NA
UHGV-0073409_54	eggNOG-mapper	742725.HMPREF9450_02077	YqaJ-like viral recombinase domain	NA
UHGV-0073409_54	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0073409_54	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0073409_56	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0073409_56	eggNOG-mapper	742725.HMPREF9450_02078	NA	NA
UHGV-0073409_57	PHROG	phrog_16706	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0073409_57	UniRef90	UniRef90_A6L485	NA	NA
UHGV-0073409_57	eggNOG-mapper	435590.BVU_2853	NA	NA
UHGV-0073409_57	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0073409_57	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0073409_57	Structural annotation	PF14297	NA	NA
UHGV-0073409_58	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0073409_58	eggNOG-mapper	202954.BBNK01000034_gene3798	NA	NA
UHGV-0073409_58	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0073409_59	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0073409_59	PHROG	phrog_31265	NA	unknown function
UHGV-0073409_59	UniRef90	UniRef90_A0A5B5VMT7	Pentapeptide repeat-containing protein	NA
UHGV-0073409_59	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0073409_59	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0073409_59	Pfam	PF19062	NA	DUF5758
UHGV-0073409_59	COG	COG1357	NA	NA
UHGV-0073409_59	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-0073409_60	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0073409_60	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0073409_60	UniRef90	UniRef90_A0A143XJM5	PAPS_reduct domain-containing protein	NA
UHGV-0073409_60	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0073409_60	PADLOC	SspD_00001	SspD	SSP
UHGV-0073409_60	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0073409_60	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0073409_60	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0073409_66	PHROG	phrog_2776	NA	unknown function
UHGV-0073409_66	UniRef90	UniRef90_UPI001297AEBA	MmcB family DNA repair protein	NA
UHGV-0073409_66	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0073409_67	PHROG	phrog_874	NA	unknown function
UHGV-0073409_67	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0073409_67	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0073409_68	eggNOG-mapper	445970.ALIPUT_02677	NA	NA
UHGV-0073409_70	PHROG	phrog_8684	NA	unknown function
UHGV-0073409_70	UniRef90	UniRef90_UPI0018AC4DA6	YopX family protein	NA
UHGV-0073409_70	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-0073409_70	Pfam	PF09643	YopX protein	YopX
UHGV-0073409_70	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0073409_70	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0073409_73	UniRef90	UniRef90_UPI001896BBDB	MerR family transcriptional regulator	NA
UHGV-0073409_73	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0073409_73	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0073409_73	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA