UHGV-0073429

Genome information

Genome length 25,822 bps

CDS count 31

Completeness 64.31% (medium-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073429
vOTU ID	vOTU-023625
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127133
BioSample	SAMEA2737752
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.54
Jumbo phage	No

Genome content
Genome length	25,822 bps
GC content	28.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	82.55%
Average CDS length	688.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073429_1	UniRef90	UniRef90_UPI000BF790AF	DEAD/DEAH box helicase family protein	NA
UHGV-0073429_1	eggNOG-mapper	1262449.CP6013_1026	NA	NA
UHGV-0073429_3	UniRef90	UniRef90_A0A1C6F615	SAP domain-containing protein	NA
UHGV-0073429_5	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0073429_5	UniRef90	UniRef90_A0A7G5NTL4	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0073429_5	eggNOG-mapper	1345695.CLSA_c30000	NA	NA
UHGV-0073429_5	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0073429_6	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0073429_6	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0073429_6	UniRef90	UniRef90_UPI0006C3AFF3	recombinase family protein	NA
UHGV-0073429_6	eggNOG-mapper	641107.CDLVIII_3183	Resolvase, N terminal domain	NA
UHGV-0073429_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0073429_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0073429_6	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0073429_7	PHROG	phrog_10400	NA	unknown function
UHGV-0073429_7	UniRef90	UniRef90_A5MYM9	Phage-related protein	NA
UHGV-0073429_7	eggNOG-mapper	1567014.A0A0A7RTU6_9VIRU	NA	NA
UHGV-0073429_8	PHROG	phrog_3202	NA	unknown function
UHGV-0073429_8	UniRef90	UniRef90_UPI00189848F6	YjzC family protein	NA
UHGV-0073429_8	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-0073429_8	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0073429_8	Structural annotation	PF14168	NA	NA
UHGV-0073429_9	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0073429_9	UniRef90	UniRef90_UPI0006C4E0BD	terminase	NA
UHGV-0073429_9	eggNOG-mapper	1443125.Z962_07895	TIGRFAM Phage	NA
UHGV-0073429_9	COG	COG5362	Phage terminase large subunit	NA
UHGV-0073429_9	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0073429_10	PHROG	phrog_64	portal protein	head and packaging
UHGV-0073429_10	UniRef90	UniRef90_UPI0006C08419	phage portal protein	NA
UHGV-0073429_10	eggNOG-mapper	1415774.U728_1093	portal protein, SPP1 Gp6-like	NA
UHGV-0073429_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0073429_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0073429_11	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0073429_11	UniRef90	UniRef90_UPI0006C641A8	minor capsid protein	NA
UHGV-0073429_11	eggNOG-mapper	1499683.CCFF01000005_gene66	Phage Mu protein F like protein	NA
UHGV-0073429_11	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0073429_11	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0073429_11	COG	COG2369	NA	NA
UHGV-0073429_11	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0073429_12	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0073429_12	UniRef90	UniRef90_UPI0006C20523	NA	NA
UHGV-0073429_12	eggNOG-mapper	1499683.CCFF01000017_gene2146	NA	NA
UHGV-0073429_12	Pfam	PF14265	NA	DUF4355
UHGV-0073429_12	Structural annotation	PF14265	NA	NA
UHGV-0073429_13	PHROG	phrog_267	major head protein	head and packaging
UHGV-0073429_13	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0073429_13	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0073429_13	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0073429_15	eggNOG-mapper	1321778.HMPREF1982_03552	NA	NA
UHGV-0073429_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0073429_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0073429_16	UniRef90	UniRef90_UPI0006BFDA1B	HK97 gp10 family phage protein	NA
UHGV-0073429_16	eggNOG-mapper	1229751.R9QMA5_9CAUD	exonuclease activity	NA
UHGV-0073429_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0073429_16	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0073429_17	Structural annotation	PF20765	NA	NA
UHGV-0073429_18	PHROG	phrog_885	major tail protein	tail
UHGV-0073429_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0073429_19	PHROG	phrog_1021	NA	unknown function
UHGV-0073429_21	PHROG	phrog_17020	NA	unknown function
UHGV-0073429_21	UniRef90	UniRef90_UPI0006C020C3	tape measure protein	NA
UHGV-0073429_21	eggNOG-mapper	1499683.CCFF01000005_gene78	phage tail tape measure protein	NA
UHGV-0073429_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0073429_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0073429_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0073429_21	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0073429_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0073429_22	UniRef90	UniRef90_UPI0006C51AB9	phage tail family protein	NA
UHGV-0073429_22	eggNOG-mapper	1499683.CCFF01000017_gene2156	tail component	NA
UHGV-0073429_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0073429_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0073429_23	UniRef90	UniRef90_A0A1C6CWB5	Phage tail protein	NA
UHGV-0073429_24	PHROG	phrog_7043	tail protein	tail
UHGV-0073429_24	UniRef90	UniRef90_UPI000AB4EEF7	phage tail protein	NA
UHGV-0073429_24	eggNOG-mapper	1499683.CCFF01000017_gene2158	Phage minor structural protein	NA
UHGV-0073429_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0073429_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0073429_24	COG	COG4926	Phage-related protein	NA
UHGV-0073429_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0073429_25	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0073429_25	UniRef90	UniRef90_UPI0018A91C78	BhlA/UviB family holin-like peptide	NA
UHGV-0073429_25	eggNOG-mapper	536232.CLM_2038	BhlA holin family	NA
UHGV-0073429_25	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0073429_27	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073429_27	UniRef90	UniRef90_A0A174H7R1	AP2 domain-containing protein	NA
UHGV-0073429_27	eggNOG-mapper	86416.Clopa_2526	AP2 domain	NA
UHGV-0073429_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0073429_27	Structural annotation	PF10729, PF13392	NA	NA
UHGV-0073429_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0073429_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0073429_28	UniRef90	UniRef90_A0A1U6JDY7	Putative DNA integration/recombination protein	NA
UHGV-0073429_28	eggNOG-mapper	1499684.CCNP01000020_gene2299	Belongs to the 'phage' integrase family	NA
UHGV-0073429_28	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0073429_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0073429_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0073429_28	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0073429_29	UniRef90	UniRef90_UPI001D0FC87D	zinc ribbon domain-containing protein	NA
UHGV-0073429_29	eggNOG-mapper	37659.JNLN01000001_gene2382	NA	NA
UHGV-0073429_30	eggNOG-mapper	1414720.CBYM010000018_gene3014	NA	NA
UHGV-0073429_31	UniRef90	UniRef90_UPI001956135A	NA	NA
UHGV-0073429_31	eggNOG-mapper	1414720.CBYM010000018_gene3013	NA	NA
UHGV-0073429_31	Pfam	PF13783	NA	DUF4177