UHGV-0073479

Genome information

Genome length 25,776 bps

CDS count 36

Completeness 55.40% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073479
vOTU ID	vOTU-017468
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137164
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.49
Jumbo phage	No

Genome content
Genome length	25,776 bps
GC content	51.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	91.14%
Average CDS length	656.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073479_1	PHROG	phrog_26612	NA	unknown function
UHGV-0073479_1	UniRef90	UniRef90_UPI001012B14A	phage tail tape measure protein	NA
UHGV-0073479_1	eggNOG-mapper	754331.AEME01000001_gene216	NA	NA
UHGV-0073479_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0073479_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0073479_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0073479_2	PHROG	phrog_166	tail protein	tail
UHGV-0073479_2	UniRef90	UniRef90_A0A3A5JV55	Phage tail assembly protein	NA
UHGV-0073479_2	eggNOG-mapper	1216966.BAUC01000041_gene2866	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0073479_2	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0073479_2	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0073479_3	PHROG	phrog_185	tail tube protein	tail
UHGV-0073479_3	UniRef90	UniRef90_J7QME8	NA	NA
UHGV-0073479_3	eggNOG-mapper	1225789.M1FJ91_9CAUD	Phage tail tube protein	NA
UHGV-0073479_3	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0073479_3	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0073479_4	PHROG	phrog_165	tail sheath	tail
UHGV-0073479_4	UniRef90	UniRef90_Q8SBH2	Tail sheath protein	NA
UHGV-0073479_4	eggNOG-mapper	1225789.M1FN90_9CAUD	Phage tail sheath protein	NA
UHGV-0073479_4	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0073479_4	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0073479_4	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0073479_5	PHROG	phrog_208	NA	unknown function
UHGV-0073479_5	UniRef90	UniRef90_J7Q674	NA	NA
UHGV-0073479_5	eggNOG-mapper	754331.AEME01000001_gene211	NA	NA
UHGV-0073479_5	Pfam	PF10948	NA	DUF2635
UHGV-0073479_5	Structural annotation	PF10948	NA	NA
UHGV-0073479_6	PHROG	phrog_209	portal protein	head and packaging
UHGV-0073479_6	UniRef90	UniRef90_A0A061KQS1	NA	NA
UHGV-0073479_6	eggNOG-mapper	754331.AEME01000001_gene210	NA	NA
UHGV-0073479_6	Structural annotation	PF09646	NA	NA
UHGV-0073479_7	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0073479_7	UniRef90	UniRef90_A0A0H3NMS1	Predicted bacteriophage protein	NA
UHGV-0073479_7	eggNOG-mapper	754331.AEME01000001_gene209	NA	NA
UHGV-0073479_7	Structural annotation	TIGR01725	NA	NA
UHGV-0073479_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-0073479_8	UniRef90	UniRef90_B7LJM4	Putative phage head-tail adaptor	NA
UHGV-0073479_8	eggNOG-mapper	754331.AEME01000001_gene208	Phage head-tail joining protein	NA
UHGV-0073479_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0073479_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0073479_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0073479_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0073479_9	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0073479_9	UniRef90	UniRef90_A0A024L3U4	Phage DNA packaging protein	NA
UHGV-0073479_9	eggNOG-mapper	754331.AEME01000001_gene207	Phage gp6-like head-tail connector protein	NA
UHGV-0073479_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0073479_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0073479_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0073479_10	PHROG	phrog_1020	NA	unknown function
UHGV-0073479_10	UniRef90	UniRef90_Q8HAD1	Sb7	NA
UHGV-0073479_10	eggNOG-mapper	1216966.BAUC01000041_gene2872	NA	NA
UHGV-0073479_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0073479_11	UniRef90	UniRef90_Q8HAD2	Sb6	NA
UHGV-0073479_11	eggNOG-mapper	1225789.M1FPN2_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0073479_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0073479_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0073479_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0073479_12	KOfam	K06904	NA	NA
UHGV-0073479_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0073479_12	UniRef90	UniRef90_Q8HAD3	Sb5	NA
UHGV-0073479_12	eggNOG-mapper	1440052.EAKF1_ch0463c	Caudovirus prohead serine protease	NA
UHGV-0073479_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0073479_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0073479_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0073479_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0073479_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0073479_13	UniRef90	UniRef90_Q8HAD4	Sb4	NA
UHGV-0073479_13	eggNOG-mapper	1440052.EAKF1_ch0464c	Phage portal protein	NA
UHGV-0073479_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0073479_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0073479_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0073479_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0073479_14	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0073479_14	UniRef90	UniRef90_A0A376KNN8	NA	NA
UHGV-0073479_14	eggNOG-mapper	316407.4062725	NA	NA
UHGV-0073479_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0073479_15	UniRef90	UniRef90_A0A0D8VBB7	Terminase	NA
UHGV-0073479_15	eggNOG-mapper	754331.AEME01000001_gene4280	Phage Terminase	NA
UHGV-0073479_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0073479_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0073479_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0073479_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0073479_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0073479_16	UniRef90	UniRef90_A0A2A7U7F5	Phage terminase small subunit P27 family	NA
UHGV-0073479_16	eggNOG-mapper	90371.CY43_10650	Phage terminase, small subunit	NA
UHGV-0073479_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0073479_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0073479_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0073479_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0073479_17	PHROG	phrog_1561	NA	unknown function
UHGV-0073479_17	UniRef90	UniRef90_A0A0H7JXF0	Bacteriophage protein	NA
UHGV-0073479_17	eggNOG-mapper	155864.EDL933_1795	NA	NA
UHGV-0073479_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0073479_18	UniRef90	UniRef90_A0A1M2SXM6	Phage terminase large subunit	NA
UHGV-0073479_18	eggNOG-mapper	155864.EDL933_1794	Phage Terminase	NA
UHGV-0073479_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0073479_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0073479_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0073479_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0073479_19	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0073479_19	UniRef90	UniRef90_D3GYD3	Prophage terminase, small subunit	NA
UHGV-0073479_19	eggNOG-mapper	155864.EDL933_1793	terminase, small subunit	NA
UHGV-0073479_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0073479_19	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0073479_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0073479_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0073479_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073479_20	UniRef90	UniRef90_A0A1Q6BBJ3	HNH endonuclease	NA
UHGV-0073479_20	eggNOG-mapper	640513.Entas_3962	HNH nucleases	NA
UHGV-0073479_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0073479_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0073479_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0073479_21	UniRef90	UniRef90_A0A0K4D017	Phage gp6-like head-tail connector protein	NA
UHGV-0073479_21	eggNOG-mapper	371042.NG99_21300	Phage gp6-like head-tail connector protein	NA
UHGV-0073479_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0073479_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0073479_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0073479_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0073479_22	UniRef90	UniRef90_A0A3L2NT61	Phage portal protein	NA
UHGV-0073479_22	eggNOG-mapper	640513.Entas_3965	TIGRFAM Phage portal protein, HK97	NA
UHGV-0073479_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0073479_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0073479_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0073479_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0073479_23	KOfam	K06904	NA	NA
UHGV-0073479_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0073479_23	UniRef90	UniRef90_A0A1M2SXU9	HK97 family phage prohead protease	NA
UHGV-0073479_23	eggNOG-mapper	640513.Entas_3966	PFAM Peptidase U35, phage prohead HK97	NA
UHGV-0073479_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0073479_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0073479_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0073479_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0073479_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0073479_24	UniRef90	UniRef90_A0A827ZJY4	Phage major capsid protein	NA
UHGV-0073479_24	eggNOG-mapper	640513.Entas_3967	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0073479_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0073479_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0073479_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0073479_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0073479_25	PHROG	phrog_5789	NA	unknown function
UHGV-0073479_25	eggNOG-mapper	640513.Entas_3969	NA	NA
UHGV-0073479_25	Structural annotation	TIGR04025	NA	NA
UHGV-0073479_26	PHROG	phrog_1957	NA	unknown function
UHGV-0073479_26	eggNOG-mapper	55207.KP22_15875	NA	NA
UHGV-0073479_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0073479_27	PHROG	phrog_28350	NA	unknown function
UHGV-0073479_27	UniRef90	UniRef90_A0A0K5JQG1	Single-stranded DNA-binding protein	NA
UHGV-0073479_27	eggNOG-mapper	502347.ESCAB7627_1696	Single-stranded DNA-binding protein	NA
UHGV-0073479_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0073479_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0073479_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0073479_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0073479_28	PHROG	phrog_1231	NA	unknown function
UHGV-0073479_28	eggNOG-mapper	198214.SF1136	NA	NA
UHGV-0073479_29	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0073479_29	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0073479_29	UniRef90	UniRef90_UPI000E04B2FA	primase-like DNA-binding domain-containing protein	NA
UHGV-0073479_29	eggNOG-mapper	1006000.GKAS_03719	D5 N terminal like	NA
UHGV-0073479_29	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0073479_29	Pfam	PF19263	NA	DUF5906
UHGV-0073479_29	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0073479_29	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0073479_29	Structural annotation	PF01057, MF_04000, NF011296, COG3378	NA	NA
UHGV-0073479_30	PHROG	phrog_285	NA	unknown function
UHGV-0073479_30	UniRef90	UniRef90_A0A2T3TJS0	NA	NA
UHGV-0073479_30	Pfam	PF13973	NA	DUF4222
UHGV-0073479_30	Structural annotation	PF13973, TIGR00739, COG4481	NA	NA
UHGV-0073479_31	PHROG	phrog_15327	NA	unknown function
UHGV-0073479_31	UniRef90	UniRef90_UPI001CCCA68A	ubiquinol-cytochrome C reductase	NA
UHGV-0073479_31	eggNOG-mapper	1005994.GTGU_04153	NA	NA
UHGV-0073479_32	PHROG	phrog_6196	transcriptional repressor	transcription regulation
UHGV-0073479_32	UniRef90	UniRef90_UPI0002CA501C	host cell division inhibitor Icd-like protein	NA
UHGV-0073479_32	eggNOG-mapper	199310.c1487	NA	NA
UHGV-0073479_32	NCBIFam	NF033153.2	host cell division inhibitor Icd-like protein	NA
UHGV-0073479_32	Structural annotation	NF033153	NA	NA
UHGV-0073479_33	PHROG	phrog_6522	NA	unknown function
UHGV-0073479_33	eggNOG-mapper	640513.Entas_3976	NA	NA
UHGV-0073479_33	NCBIFam	NF041551.1	YlcI/YnfO family protein	NA
UHGV-0073479_33	Structural annotation	NF041551	NA	NA
UHGV-0073479_34	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0073479_34	PHROG	phrog_2790	excisionase and transcriptional regulator	integration and excision
UHGV-0073479_34	UniRef90	UniRef90_A0A1C7CBZ8	AlpA family phage regulatory protein	NA
UHGV-0073479_34	eggNOG-mapper	198628.Dda3937_01590	Prophage CP4-57 regulatory protein (AlpA)	NA
UHGV-0073479_34	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0073479_34	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0073479_34	Structural annotation	PF05930, NF040990, COG3311	NA	NA
UHGV-0073479_35	PHROG	phrog_23422	NA	unknown function
UHGV-0073479_35	UniRef90	UniRef90_UPI00101F680C	NA	NA
UHGV-0073479_35	eggNOG-mapper	640513.Entas_3978	NA	NA
UHGV-0073479_35	AcrCatalog	cluster_23618	NA	NA
UHGV-0073479_35	Pfam	PF19924	NA	DUF6387
UHGV-0073479_35	Structural annotation	PF19924	NA	NA
UHGV-0073479_36	KOfam	K14059	int; integrase	NA
UHGV-0073479_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0073479_36	UniRef90	UniRef90_A0A376SIB6	Phage integrase family site specific recombinase	NA
UHGV-0073479_36	eggNOG-mapper	155864.EDL933_1774	Belongs to the 'phage' integrase family	NA
UHGV-0073479_36	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0073479_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0073479_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0073479_36	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA