UHGV-0073491

Genome information

Genome length 42,351 bps

CDS count 74

Completeness 95.09% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073491
vOTU ID	vOTU-067847
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_112956
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.08
Jumbo phage	No

Genome content
Genome length	42,351 bps
GC content	36.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	89.99%
Average CDS length	518.07 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073491_1	PHROG	phrog_87	metallo-protease	other
UHGV-0073491_1	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0073491_1	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0073491_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0073491_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0073491_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0073491_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073491_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073491_2	UniRef90	UniRef90_A0A417V5F8	XRE family transcriptional regulator	NA
UHGV-0073491_2	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0073491_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073491_2	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0073491_2	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0073491_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073491_3	UniRef90	UniRef90_A0A417V5F3	XRE family transcriptional regulator	NA
UHGV-0073491_3	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0073491_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073491_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0073491_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0073491_6	PHROG	phrog_36464	NA	unknown function
UHGV-0073491_6	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0073491_6	Structural annotation	PF09035	NA	NA
UHGV-0073491_10	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0073491_10	UniRef90	UniRef90_UPI00156F9B5D	siphovirus Gp157 family protein	NA
UHGV-0073491_10	eggNOG-mapper	683837.lse_2160	Siphovirus Gp157	NA
UHGV-0073491_10	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0073491_10	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0073491_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0073491_11	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-0073491_11	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0073491_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0073491_11	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0073491_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0073491_12	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0073491_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0073491_13	PHROG	phrog_7566	NA	unknown function
UHGV-0073491_13	UniRef90	UniRef90_A0A374AGN9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0073491_13	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0073491_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0073491_14	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0073491_14	UniRef90	UniRef90_A0A173TYT6	Endodeoxyribonuclease RusA	NA
UHGV-0073491_14	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0073491_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0073491_14	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0073491_15	PHROG	phrog_16304	NA	unknown function
UHGV-0073491_15	UniRef90	UniRef90_A0A416S3A2	Phage_rep_org_N domain-containing protein	NA
UHGV-0073491_15	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0073491_15	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0073491_16	PHROG	phrog_1123	NA	unknown function
UHGV-0073491_16	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-0073491_16	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0073491_16	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-0073491_17	UniRef90	UniRef90_A0A173TZ35	Transposase	NA
UHGV-0073491_17	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0073491_17	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0073491_17	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0073491_19	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0073491_24	UniRef90	UniRef90_UPI001CD21EDD	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0073491_24	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0073491_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0073491_25	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0073491_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0073491_25	UniRef90	UniRef90_A0A173TY56	PUA domain (Predicted RNA-binding domain)	NA
UHGV-0073491_25	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0073491_25	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0073491_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0073491_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0073491_25	Structural annotation	PF01507, MF_00063, TIGR02055	NA	NA
UHGV-0073491_26	PHROG	phrog_1672	NA	unknown function
UHGV-0073491_26	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-0073491_26	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-0073491_29	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0073491_30	Structural annotation	PF14084	NA	NA
UHGV-0073491_32	Structural annotation	PF14844	NA	NA
UHGV-0073491_34	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0073491_34	UniRef90	UniRef90_A0A173TWB1	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0073491_34	eggNOG-mapper	445335.CBN_1365	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0073491_34	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0073491_34	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0073491_34	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0073491_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073491_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073491_35	UniRef90	UniRef90_A0A173U128	Transcriptional regulator, y4mF family	NA
UHGV-0073491_35	eggNOG-mapper	1232453.BAIF02000002_gene1306	helix-turn-helix	NA
UHGV-0073491_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073491_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0073491_35	Structural annotation	PF13560, MF_02017, NF041951, COG1396	NA	NA
UHGV-0073491_39	Structural annotation	PF14285	NA	NA
UHGV-0073491_43	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0073491_44	PHROG	phrog_15863	NA	unknown function
UHGV-0073491_44	UniRef90	UniRef90_A0A417UWU3	J domain-containing protein	NA
UHGV-0073491_44	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0073491_44	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0073491_46	UniRef90	UniRef90_A0A173TX46	HTH cro/C1-type domain-containing protein	NA
UHGV-0073491_46	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0073491_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0073491_46	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0073491_48	PHROG	phrog_33130	NA	unknown function
UHGV-0073491_48	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0073491_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073491_49	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0073491_49	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0073491_49	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0073491_49	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0073491_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0073491_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0073491_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0073491_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073491_49	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0073491_51	PHROG	phrog_533	portal protein	head and packaging
UHGV-0073491_51	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0073491_51	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0073491_51	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0073491_52	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0073491_52	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0073491_52	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0073491_52	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0073491_52	COG	COG2369	NA	NA
UHGV-0073491_52	Structural annotation	PF06152	NA	NA
UHGV-0073491_53	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0073491_54	PHROG	phrog_1048	NA	unknown function
UHGV-0073491_54	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0073491_55	PHROG	phrog_419	NA	unknown function
UHGV-0073491_55	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0073491_55	Structural annotation	PF14083	NA	NA
UHGV-0073491_56	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0073491_56	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0073491_56	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0073491_57	PHROG	phrog_247	major head protein	head and packaging
UHGV-0073491_57	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0073491_57	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0073491_57	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0073491_58	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0073491_58	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0073491_59	PHROG	phrog_1233	NA	unknown function
UHGV-0073491_59	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0073491_60	PHROG	phrog_3366	NA	unknown function
UHGV-0073491_60	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0073491_60	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0073491_61	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0073491_61	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0073491_61	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0073491_61	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0073491_61	Structural annotation	PF11114	NA	NA
UHGV-0073491_62	PHROG	phrog_3266	tail completion	connector
UHGV-0073491_62	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0073491_62	Structural annotation	PF12691	NA	NA
UHGV-0073491_63	PHROG	phrog_3099	NA	unknown function
UHGV-0073491_63	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0073491_63	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0073491_64	PHROG	phrog_11299	NA	unknown function
UHGV-0073491_64	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0073491_64	Structural annotation	PF10666	NA	NA
UHGV-0073491_65	PHROG	phrog_706	NA	unknown function
UHGV-0073491_65	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0073491_65	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0073491_65	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0073491_65	Structural annotation	PF06854	NA	NA
UHGV-0073491_66	PHROG	phrog_28918	NA	unknown function
UHGV-0073491_66	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0073491_66	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0073491_66	COG	COG5412	Phage-related protein	NA
UHGV-0073491_67	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0073491_68	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0073491_68	PHROG	phrog_6616	tail protein	tail
UHGV-0073491_68	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0073491_68	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0073491_68	Pfam	PF15711	Interleukin-like EMT inducer	ILEI
UHGV-0073491_68	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0073491_68	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0073491_69	PHROG	phrog_18444	NA	unknown function
UHGV-0073491_72	Structural annotation	PF08931	NA	NA
UHGV-0073491_73	PHROG	phrog_962	holin	lysis
UHGV-0073491_73	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-0073491_73	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0073491_73	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0073491_73	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0073491_73	COG	COG5546	NA	NA
UHGV-0073491_73	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-0073491_74	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0073491_74	PHROG	phrog_670	endolysin	lysis
UHGV-0073491_74	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-0073491_74	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0073491_74	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0073491_74	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0073491_74	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0073491_74	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA