UHGV-0073503

Genome information

Genome length 32,078 bps

CDS count 45

Completeness 70.46% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073503
vOTU ID	vOTU-031806
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_105482
BioSample	SAMEA2452121
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59
Jumbo phage	No

Genome content
Genome length	32,078 bps
GC content	29.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.61%
Average CDS length	661.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073503_1	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073503_1	UniRef90	UniRef90_UPI001D16A231	VRR-NUC domain-containing protein	NA
UHGV-0073503_1	eggNOG-mapper	1280692.AUJL01000009_gene2988	VRR_NUC	NA
UHGV-0073503_1	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0073503_1	Structural annotation	COG1591	NA	NA
UHGV-0073503_2	PHROG	phrog_4601	NA	unknown function
UHGV-0073503_3	PHROG	phrog_3659	NA	unknown function
UHGV-0073503_3	eggNOG-mapper	1280692.AUJL01000009_gene2989	NA	NA
UHGV-0073503_4	PHROG	phrog_3777	NA	unknown function
UHGV-0073503_4	UniRef90	UniRef90_UPI0018997DED	NA	NA
UHGV-0073503_4	Pfam	PF12957	NA	DUF3846
UHGV-0073503_5	PHROG	phrog_8097	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073503_5	UniRef90	UniRef90_UPI00035BA418	AAA family ATPase	NA
UHGV-0073503_5	eggNOG-mapper	445335.CBN_1356	AAA domain	NA
UHGV-0073503_5	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0073503_5	Pfam	PF13479	AAA domain	AAA_24
UHGV-0073503_5	COG	COG2887	RecB family exonuclease	NA
UHGV-0073503_5	Structural annotation	PF13479, PF10926, MF_00350, TIGR01618, COG2874, COG4343	NA	NA
UHGV-0073503_7	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0073503_7	UniRef90	UniRef90_UPI00189A54ED	NA	NA
UHGV-0073503_7	eggNOG-mapper	1280692.AUJL01000009_gene2993	NA	NA
UHGV-0073503_7	Pfam	PF05037	NA	DUF669
UHGV-0073503_7	Structural annotation	PF05037	NA	NA
UHGV-0073503_8	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073503_8	UniRef90	UniRef90_A0A1I3PZN3	NUMOD4 motif-containing protein	NA
UHGV-0073503_8	eggNOG-mapper	1396.DJ87_2709	NUMOD4 motif	NA
UHGV-0073503_10	UniRef90	UniRef90_UPI00189AE1E0	NA	NA
UHGV-0073503_10	Structural annotation	PF18892	NA	NA
UHGV-0073503_12	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0073503_12	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0073503_12	UniRef90	UniRef90_A0A1I3PZG2	DNA polymerase family B	NA
UHGV-0073503_12	eggNOG-mapper	1280692.AUJL01000009_gene2997	DNA polymerase elongation subunit (Family B)	NA
UHGV-0073503_12	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0073503_12	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0073503_15	PHROG	phrog_18716	NA	unknown function
UHGV-0073503_15	UniRef90	UniRef90_A0A268IIR4	NA	NA
UHGV-0073503_15	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0073503_15	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0073503_15	Structural annotation	PF18909	NA	NA
UHGV-0073503_18	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0073503_18	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0073503_18	UniRef90	UniRef90_UPI00189760C9	phage/plasmid primase, P4 family	NA
UHGV-0073503_18	eggNOG-mapper	445335.CBN_1368	TIGRFAM phage plasmid primase, P4 family, C-terminal domain	NA
UHGV-0073503_18	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0073503_18	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0073503_18	Pfam	PF19263	NA	DUF5906
UHGV-0073503_18	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0073503_18	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0073503_18	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0073503_18	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0073503_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0073503_19	UniRef90	UniRef90_A0A1C6GVC2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0073503_19	eggNOG-mapper	1540257.JQMW01000013_gene751	sigma factor activity	NA
UHGV-0073503_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0073503_19	Structural annotation	PF08281, MF_00245, TIGR01636, COG1595	NA	NA
UHGV-0073503_20	PHROG	phrog_3218	terminase small subunit	head and packaging
UHGV-0073503_20	UniRef90	UniRef90_A0A1C6GV69	Tc3 transposase	NA
UHGV-0073503_20	eggNOG-mapper	1443122.Z958_05790	Helix-turn-helix domain of resolvase	NA
UHGV-0073503_20	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0073503_20	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0073503_21	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073503_21	UniRef90	UniRef90_UPI0013713B4D	GIY-YIG nuclease family protein	NA
UHGV-0073503_21	eggNOG-mapper	1280692.AUJL01000004_gene859	GIY-YIG type nucleases (URI domain)	NA
UHGV-0073503_21	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0073503_21	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0073503_21	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0073503_22	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0073503_22	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0073503_22	UniRef90	UniRef90_A0A1C5P9J9	Putative transposon Tn552 DNA-invertase bin3	NA
UHGV-0073503_22	eggNOG-mapper	1301100.HG529364_gene2882	PFAM Resolvase	NA
UHGV-0073503_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0073503_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0073503_22	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0073503_23	PHROG	phrog_14112	NA	unknown function
UHGV-0073503_23	eggNOG-mapper	1151292.QEW_0412	chromosome segregation	NA
UHGV-0073503_23	COG	COG5410	NA	NA
UHGV-0073503_23	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0073503_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0073503_24	UniRef90	UniRef90_UPI00189BFC5F	phage portal protein	NA
UHGV-0073503_24	eggNOG-mapper	1280692.AUJL01000004_gene853	portal protein, SPP1 Gp6-like	NA
UHGV-0073503_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0073503_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0073503_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0073503_25	UniRef90	UniRef90_A0A1C6KP58	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0073503_25	eggNOG-mapper	1540257.JQMW01000013_gene746	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0073503_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0073503_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0073503_25	COG	COG2369	NA	NA
UHGV-0073503_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0073503_26	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0073503_26	UniRef90	UniRef90_UPI00097FD426	NA	NA
UHGV-0073503_26	eggNOG-mapper	1280692.AUJL01000004_gene848	NA	NA
UHGV-0073503_26	Pfam	PF14265	NA	DUF4355
UHGV-0073503_26	Structural annotation	PF14265	NA	NA
UHGV-0073503_27	PHROG	phrog_909	major head protein	head and packaging
UHGV-0073503_27	UniRef90	UniRef90_UPI001D2572A1	head decoration protein	NA
UHGV-0073503_27	eggNOG-mapper	1280692.AUJL01000004_gene847	NA	NA
UHGV-0073503_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-0073503_28	UniRef90	UniRef90_A0A1C6KXX0	Phage major capsid protein E	NA
UHGV-0073503_28	eggNOG-mapper	1280692.AUJL01000004_gene846	Phage major capsid protein E	NA
UHGV-0073503_28	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0073503_28	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0073503_29	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0073503_29	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0073503_29	UniRef90	UniRef90_UPI00164B0099	collagen-like protein	NA
UHGV-0073503_29	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0073503_30	UniRef90	UniRef90_UPI0013C967CA	phage head-tail connector protein	NA
UHGV-0073503_30	eggNOG-mapper	1540257.JQMW01000013_gene740	NA	NA
UHGV-0073503_31	PHROG	phrog_3366	NA	unknown function
UHGV-0073503_31	eggNOG-mapper	1540257.JQMW01000013_gene739	NA	NA
UHGV-0073503_31	Pfam	PF20536	NA	DUF6751
UHGV-0073503_31	Structural annotation	PF20536	NA	NA
UHGV-0073503_32	eggNOG-mapper	318464.IO99_00565	NA	NA
UHGV-0073503_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0073503_33	UniRef90	UniRef90_UPI0018974AA2	minor capsid protein	NA
UHGV-0073503_33	eggNOG-mapper	1499683.CCFF01000017_gene2571	Minor capsid protein	NA
UHGV-0073503_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0073503_33	Structural annotation	PF11114	NA	NA
UHGV-0073503_35	PHROG	phrog_3266	tail completion	connector
UHGV-0073503_35	UniRef90	UniRef90_A0A386PKM4	Chloramphenicol resistance protein	NA
UHGV-0073503_35	eggNOG-mapper	1540257.JQMW01000013_gene737	NA	NA
UHGV-0073503_35	Structural annotation	PF12691	NA	NA
UHGV-0073503_36	PHROG	phrog_3099	NA	unknown function
UHGV-0073503_36	eggNOG-mapper	1499683.CCFF01000017_gene2569	NA	NA
UHGV-0073503_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0073503_37	PHROG	phrog_4450	NA	unknown function
UHGV-0073503_37	UniRef90	UniRef90_UPI00189B03CF	AP endonuclease	NA
UHGV-0073503_37	eggNOG-mapper	1499683.CCFF01000017_gene2568	NA	NA
UHGV-0073503_37	Pfam	PF20378	NA	DUF6673
UHGV-0073503_37	Structural annotation	PF20378	NA	NA
UHGV-0073503_38	PHROG	phrog_706	NA	unknown function
UHGV-0073503_38	UniRef90	UniRef90_UPI001897BFC5	bacteriophage Gp15 family protein	NA
UHGV-0073503_38	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0073503_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0073503_38	Structural annotation	PF06854	NA	NA
UHGV-0073503_39	UniRef90	UniRef90_UPI001896F1D3	PH domain-containing protein	NA
UHGV-0073503_40	PHROG	phrog_6417	translational regulator	other
UHGV-0073503_40	UniRef90	UniRef90_UPI0009329A7D	Com family DNA-binding transcriptional regulator	NA
UHGV-0073503_40	eggNOG-mapper	1540257.JQMW01000013_gene732	Mu-like prophage protein Com	NA
UHGV-0073503_40	Pfam	PF10122	NA	Mu-like_Com
UHGV-0073503_40	Structural annotation	PF01667, MF_00371, TIGR02098, COG2051	NA	NA
UHGV-0073503_41	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0073503_41	UniRef90	UniRef90_UPI00189A502F	phage tail protein	NA
UHGV-0073503_41	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0073503_41	COG	COG1511	NA	NA
UHGV-0073503_42	PHROG	phrog_4538	NA	unknown function
UHGV-0073503_42	UniRef90	UniRef90_UPI000772F45F	zinc-ribbon domain-containing protein	NA
UHGV-0073503_42	eggNOG-mapper	537007.BLAHAN_05487	NA	NA
UHGV-0073503_42	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0073503_42	Structural annotation	PF04480, PF14311, PF01325, TIGR00632, COG3727	NA	NA
UHGV-0073503_43	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0073503_43	COG	COG1511	NA	NA
UHGV-0073503_44	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0073503_44	UniRef90	UniRef90_A0A8I2ANU5	Phage tail family protein	NA
UHGV-0073503_44	eggNOG-mapper	1476973.JMMB01000007_gene1065	Src homology 3 domains	NA
UHGV-0073503_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0073503_44	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0073503_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0073503_44	COG	COG3103	NA	NA
UHGV-0073503_44	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-0073503_45	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0073503_45	UniRef90	UniRef90_UPI00047B9FA6	phage tail protein	NA
UHGV-0073503_45	eggNOG-mapper	1340434.AXVA01000005_gene4864	Prophage endopeptidase tail	NA
UHGV-0073503_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0073503_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0073503_45	COG	COG4926	Phage-related protein	NA
UHGV-0073503_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA