UHGV-0073521

Genome information

Genome length 23,858 bps

CDS count 36

Completeness 67.11% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073521
vOTU ID	vOTU-029823
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_135891
BioSample	SAMEA2737811
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.32
Jumbo phage	No

Genome content
Genome length	23,858 bps
GC content	39.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	87.86%
Average CDS length	586.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073521_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0073521_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0073521_1	UniRef90	UniRef90_A0A2N0UK65	Sigma-24	NA
UHGV-0073521_1	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0073521_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0073521_1	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0073521_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0073521_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0073521_1	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA
UHGV-0073521_2	KOfam	K14059	int; integrase	NA
UHGV-0073521_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0073521_2	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-0073521_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0073521_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0073521_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0073521_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0073521_3	KOfam	K21463	tcaA; membrane-associated protein TcaA	NA
UHGV-0073521_3	UniRef90	UniRef90_A0A412DWX4	Tetratricopeptide repeat protein	NA
UHGV-0073521_3	Pfam	PF13428	Tetratricopeptide repeat	TPR_14
UHGV-0073521_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0073521_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0073521_4	UniRef90	UniRef90_A0A2N0UXR0	LexA repressor	NA
UHGV-0073521_4	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0073521_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073521_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0073521_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0073521_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0073521_5	UniRef90	UniRef90_A0A2N0UXQ7	HTH cro/C1-type domain-containing protein	NA
UHGV-0073521_5	eggNOG-mapper	78346.BRUM_0420	NA	NA
UHGV-0073521_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073521_5	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0073521_7	PHROG	phrog_2232	NA	unknown function
UHGV-0073521_7	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0073521_7	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0073521_7	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0073521_7	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0073521_9	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0073521_9	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0073521_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0073521_9	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0073521_9	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0073521_9	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0073521_11	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0073521_11	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0073521_11	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0073521_11	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0073521_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0073521_14	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0073521_14	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0073521_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0073521_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0073521_15	PHROG	phrog_18107	NA	unknown function
UHGV-0073521_15	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0073521_15	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0073521_15	Structural annotation	PF05037	NA	NA
UHGV-0073521_16	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0073521_16	UniRef90	UniRef90_A0A372V4F7	ERCC4 domain-containing protein	NA
UHGV-0073521_16	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0073521_16	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0073521_16	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0073521_16	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0073521_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0073521_17	UniRef90	UniRef90_UPI00188CCFE8	Lrp/AsnC family transcriptional regulator	NA
UHGV-0073521_17	eggNOG-mapper	445974.CLORAM_02950	NA	NA
UHGV-0073521_17	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0073521_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0073521_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0073521_18	UniRef90	UniRef90_A0A1C6JHY9	DNA helicase	NA
UHGV-0073521_18	eggNOG-mapper	1280689.AUJC01000011_gene1502	Participates in initiation and elongation during chromosome replication	NA
UHGV-0073521_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0073521_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0073521_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0073521_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0073521_20	PHROG	phrog_8684	NA	unknown function
UHGV-0073521_20	UniRef90	UniRef90_A0A412ULY6	YopX domain-containing protein	NA
UHGV-0073521_20	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0073521_20	Pfam	PF09643	YopX protein	YopX
UHGV-0073521_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0073521_24	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0073521_24	Structural annotation	PF15597	NA	NA
UHGV-0073521_26	COG	COG0073	tRNA-binding EMAP/Myf domain	NA
UHGV-0073521_27	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0073521_27	UniRef90	UniRef90_A0A2N0ULX9	Methyltransf_11 domain-containing protein	NA
UHGV-0073521_27	eggNOG-mapper	457405.FSDG_01549	methyltransferase	NA
UHGV-0073521_27	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0073521_27	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0073521_27	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0073521_27	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0073521_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0073521_29	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0073521_29	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0073521_29	Pfam	PF07374	NA	DUF1492
UHGV-0073521_29	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0073521_30	PHROG	phrog_8680	NA	unknown function
UHGV-0073521_30	UniRef90	UniRef90_A0A373KTP5	NA	NA
UHGV-0073521_30	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0073521_30	Pfam	PF14386	NA	DUF4417
UHGV-0073521_30	Structural annotation	PF14386	NA	NA
UHGV-0073521_31	PHROG	phrog_9479	NA	unknown function
UHGV-0073521_31	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-0073521_31	Pfam	PF15529	Bacterial toxin 24	Ntox24
UHGV-0073521_31	Structural annotation	PF15529	NA	NA
UHGV-0073521_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0073521_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0073521_32	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0073521_32	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0073521_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0073521_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0073521_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0073521_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073521_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0073521_33	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0073521_33	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0073521_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0073521_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073521_33	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0073521_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0073521_34	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0073521_34	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0073521_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0073521_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0073521_35	UniRef90	UniRef90_A0A412UNH8	Minor capsid protein	NA
UHGV-0073521_35	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0073521_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0073521_35	COG	COG2369	NA	NA
UHGV-0073521_35	Structural annotation	PF06152	NA	NA