UHGV-0073586

Genome information

Genome length 44,021 bps

CDS count 63

Completeness 100.00% (complete)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073586
vOTU ID	vOTU-002197
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127389
BioSample	SAMEA2737741
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.19
Jumbo phage	No

Genome content
Genome length	44,021 bps
GC content	52.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	94.95%
Average CDS length	667.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073586_1	PHROG	phrog_7964	NA	unknown function
UHGV-0073586_1	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0073586_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0073586_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0073586_2	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0073586_2	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0073586_2	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0073586_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0073586_3	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0073586_3	UniRef90	UniRef90_A0A413KZI1	DNA cytosine methyltransferase	NA
UHGV-0073586_3	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0073586_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0073586_4	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0073586_4	Structural annotation	PF05223, NF003262	NA	NA
UHGV-0073586_5	PHROG	phrog_3136	NA	unknown function
UHGV-0073586_5	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0073586_5	Pfam	PF04266	ASCH domain	ASCH
UHGV-0073586_5	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0073586_5	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0073586_11	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0073586_11	NCBIFam	NF041551.1	YlcI/YnfO family protein	NA
UHGV-0073586_11	COG	COG4877	NA	NA
UHGV-0073586_11	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0073586_14	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0073586_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073586_15	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0073586_15	UniRef90	UniRef90_UPI0010311CEE	phage terminase large subunit	NA
UHGV-0073586_15	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0073586_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0073586_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073586_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0073586_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-0073586_16	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0073586_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0073586_17	KOfam	K07584	NA	NA
UHGV-0073586_17	PHROG	phrog_4478	peptidase	other
UHGV-0073586_17	UniRef90	UniRef90_UPI001C027204	ribosomal-processing cysteine protease Prp	NA
UHGV-0073586_17	eggNOG-mapper	718252.FP2_29210	Cysteine protease Prp	NA
UHGV-0073586_17	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0073586_17	COG	COG2868	NA	NA
UHGV-0073586_17	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0073586_18	PHROG	phrog_13908	NA	unknown function
UHGV-0073586_18	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0073586_19	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0073586_19	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0073586_19	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0073586_19	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0073586_19	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0073586_21	PHROG	phrog_12105	NA	unknown function
UHGV-0073586_21	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0073586_22	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0073586_22	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0073586_22	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0073586_24	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0073586_25	PHROG	phrog_22978	NA	unknown function
UHGV-0073586_25	UniRef90	UniRef90_R5G452	PBECR5 domain-containing protein	NA
UHGV-0073586_25	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0073586_25	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0073586_31	PHROG	phrog_19280	NA	unknown function
UHGV-0073586_31	UniRef90	UniRef90_A0A412ELS8	NA	NA
UHGV-0073586_31	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0073586_31	Pfam	PF19789	NA	DUF6273
UHGV-0073586_31	Structural annotation	PF19789	NA	NA
UHGV-0073586_33	PHROG	phrog_134	NA	unknown function
UHGV-0073586_33	UniRef90	UniRef90_A0A7X5EAM0	XkdX family protein	NA
UHGV-0073586_33	eggNOG-mapper	742733.HMPREF9469_05014	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0073586_33	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0073586_34	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0073586_34	PHROG	phrog_2649	endolysin	lysis
UHGV-0073586_34	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0073586_34	eggNOG-mapper	44060.JODL01000010_gene1575	Negative regulator of	NA
UHGV-0073586_34	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0073586_34	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0073586_34	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0073586_34	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0073586_35	PHROG	phrog_1863	NA	unknown function
UHGV-0073586_35	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0073586_36	PHROG	phrog_10091	holin	lysis
UHGV-0073586_36	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0073586_36	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0073586_36	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0073586_36	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0073586_36	COG	COG5546	NA	NA
UHGV-0073586_36	Structural annotation	COG5546	NA	NA
UHGV-0073586_37	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0073586_38	PHROG	phrog_3754	NA	unknown function
UHGV-0073586_38	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0073586_39	PHROG	phrog_21718	NA	unknown function
UHGV-0073586_39	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0073586_40	PHROG	phrog_22984	NA	unknown function
UHGV-0073586_41	PHROG	phrog_16490	NA	unknown function
UHGV-0073586_41	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0073586_41	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0073586_42	PHROG	phrog_20016	NA	unknown function
UHGV-0073586_42	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0073586_42	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0073586_42	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0073586_43	Structural annotation	PF12510	NA	NA
UHGV-0073586_44	KOfam	K14059	int; integrase	NA
UHGV-0073586_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0073586_44	UniRef90	UniRef90_A0A3D3Y0G6	Integrase	NA
UHGV-0073586_44	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0073586_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0073586_44	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0073586_44	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0073586_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073586_45	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0073586_46	eggNOG-mapper	471855.Shel_04260	dextransucrase activity	NA
UHGV-0073586_46	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0073586_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073586_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073586_48	UniRef90	UniRef90_A0A3D3T8Y1	XRE family transcriptional regulator	NA
UHGV-0073586_48	eggNOG-mapper	525254.HMPREF0072_1327	DNA-binding helix-turn-helix protein	NA
UHGV-0073586_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073586_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0073586_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0073586_53	PHROG	phrog_4292	NA	unknown function
UHGV-0073586_53	UniRef90	UniRef90_I7J4K2	Phage related protein	NA
UHGV-0073586_53	eggNOG-mapper	1118063.I7J6R1_9CAUD	NA	NA
UHGV-0073586_54	Structural annotation	PF18129, PF08962, MF_00613, NF002745	NA	NA
UHGV-0073586_56	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0073586_56	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073586_56	UniRef90	UniRef90_A0A3A9HXV3	AAA_23 domain-containing protein	NA
UHGV-0073586_56	eggNOG-mapper	1178537.BA1_15609	nuclear chromosome segregation	NA
UHGV-0073586_56	Pfam	PF13476	AAA domain	AAA_23
UHGV-0073586_56	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0073586_56	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0073586_57	PHROG	phrog_862	NA	unknown function
UHGV-0073586_57	eggNOG-mapper	1235835.C814_00380	NA	NA
UHGV-0073586_57	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0073586_58	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0073586_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0073586_58	UniRef90	UniRef90_UPI00195A5026	MBL fold metallo-hydrolase	NA
UHGV-0073586_58	eggNOG-mapper	926692.AZYG01000059_gene79	Metallo-beta-lactamase superfamily	NA
UHGV-0073586_58	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0073586_58	dbAPIS	APIS058	NA	NA
UHGV-0073586_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0073586_58	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0073586_59	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0073586_59	eggNOG-mapper	931626.Awo_c31180	DnaD domain protein	NA
UHGV-0073586_59	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0073586_59	Structural annotation	PF07261, PF09681, TIGR01446, TIGR01714	NA	NA
UHGV-0073586_63	PHROG	phrog_5070	NA	unknown function
UHGV-0073586_63	UniRef90	UniRef90_A0A373IMM1	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0073586_63	eggNOG-mapper	1205681.CALW02000068_gene557	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0073586_63	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0073586_63	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA