UHGV-0073671

Genome information

Genome length 24,771 bps

CDS count 40

Completeness 64.28% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073671
vOTU ID	vOTU-018449
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_110497
BioSample	SAMEA2580156
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.76
Jumbo phage	No

Genome content
Genome length	24,771 bps
GC content	45.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	96.90%
Average CDS length	606.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073671_1	UniRef90	UniRef90_UPI0005C81FAE	SHOCT domain-containing protein	NA
UHGV-0073671_1	eggNOG-mapper	1232428.CAVO010000017_gene930	NA	NA
UHGV-0073671_1	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0073671_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0073671_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0073671_2	UniRef90	UniRef90_E4L8D2	Repressor LexA	NA
UHGV-0073671_2	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0073671_2	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0073671_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0073671_2	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0073671_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0073671_2	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0073671_3	eggNOG-mapper	910314.HMPREF9220_0645	NA	NA
UHGV-0073671_3	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0073671_4	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0073671_6	PHROG	phrog_14367	NA	unknown function
UHGV-0073671_6	UniRef90	UniRef90_E4L8C9	LysM domain-containing protein	NA
UHGV-0073671_6	eggNOG-mapper	1123288.SOV_5c02190	Lysin motif	NA
UHGV-0073671_6	COG	COG1388	LysM repeat	NA
UHGV-0073671_6	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0073671_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073671_8	UniRef90	UniRef90_A0A134CHS9	YqaJ viral recombinase family protein	NA
UHGV-0073671_8	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-0073671_8	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0073671_8	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0073671_8	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0073671_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0073671_9	Structural annotation	PF17020, MF_01549, TIGR00405, COG1862	NA	NA
UHGV-0073671_10	PHROG	phrog_14808	NA	unknown function
UHGV-0073671_10	eggNOG-mapper	679201.HMPREF9334_00304	NA	NA
UHGV-0073671_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0073671_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0073671_11	UniRef90	UniRef90_A0A316M5N2	Recombinase RecT	NA
UHGV-0073671_11	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-0073671_11	Pfam	PF03837	RecT family	RecT
UHGV-0073671_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0073671_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0073671_11	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0073671_12	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0073671_12	UniRef90	UniRef90_J4UZ99	PF14359 domain protein	NA
UHGV-0073671_12	eggNOG-mapper	936573.HMPREF1147_1315	NA	NA
UHGV-0073671_12	Pfam	PF14359	NA	DUF4406
UHGV-0073671_12	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0073671_13	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0073671_13	UniRef90	UniRef90_UPI0018C51489	NA	NA
UHGV-0073671_13	eggNOG-mapper	706434.HMPREF9429_00772	NA	NA
UHGV-0073671_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0073671_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0073671_13	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0073671_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0073671_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0073671_14	UniRef90	UniRef90_R6BBB2	DNA replication protein DnaC	NA
UHGV-0073671_14	eggNOG-mapper	1280706.AUJE01000003_gene2277	DNA-dependent DNA replication	NA
UHGV-0073671_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0073671_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0073671_14	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0073671_15	Structural annotation	PF17887	NA	NA
UHGV-0073671_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0073671_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0073671_16	UniRef90	UniRef90_F2BXW4	Single-stranded DNA-binding protein	NA
UHGV-0073671_16	eggNOG-mapper	888062.HMPREF9083_1032	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0073671_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0073671_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0073671_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0073671_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0073671_16	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0073671_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0073671_18	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0073671_18	UniRef90	UniRef90_UPI001475C7F0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0073671_18	eggNOG-mapper	1151292.QEW_0652	BRO family, N-terminal domain	NA
UHGV-0073671_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0073671_18	COG	COG3617	Prophage antirepressor	NA
UHGV-0073671_18	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0073671_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0073671_19	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0073671_19	UniRef90	UniRef90_A0A134CHV4	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0073671_19	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0073671_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0073671_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0073671_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0073671_21	eggNOG-mapper	796940.HMPREF9628_00155	NA	NA
UHGV-0073671_21	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0073671_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0073671_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0073671_22	UniRef90	UniRef90_UPI000F8CDB0C	terminase small subunit	NA
UHGV-0073671_22	eggNOG-mapper	883156.HMPREF9282_00945	terminase, small subunit	NA
UHGV-0073671_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0073671_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0073671_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0073671_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073671_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0073671_23	UniRef90	UniRef90_A0A316LP82	PBSX family phage terminase large subunit	NA
UHGV-0073671_23	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0073671_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0073671_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0073671_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0073671_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073671_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0073671_24	PHROG	phrog_145	portal protein	head and packaging
UHGV-0073671_24	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0073671_24	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0073671_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0073671_25	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0073671_25	UniRef90	UniRef90_R7PPR8	Ntox50 domain-containing protein	NA
UHGV-0073671_25	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0073671_25	Pfam	PF21814	NA	DUF6883
UHGV-0073671_25	Structural annotation	PF21814	NA	NA
UHGV-0073671_27	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0073671_27	eggNOG-mapper	888060.HMPREF9081_1551	NA	NA
UHGV-0073671_27	Structural annotation	PF06810	NA	NA
UHGV-0073671_28	PHROG	phrog_212	major head protein	head and packaging
UHGV-0073671_28	UniRef90	UniRef90_A0A7Z0TEG2	Phage capsid protein	NA
UHGV-0073671_28	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-0073671_28	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0073671_29	PHROG	phrog_15682	NA	unknown function
UHGV-0073671_29	UniRef90	UniRef90_A0A7C6KAU2	Rho_N domain-containing protein	NA
UHGV-0073671_29	eggNOG-mapper	1196028.ALEF01000043_gene463	NA	NA
UHGV-0073671_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0073671_30	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-0073671_30	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-0073671_30	COG	COG5005	NA	NA
UHGV-0073671_30	Structural annotation	TIGR01725	NA	NA
UHGV-0073671_31	eggNOG-mapper	568816.Acin_1233	NA	NA
UHGV-0073671_32	eggNOG-mapper	568816.Acin_1232	NA	NA
UHGV-0073671_32	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0073671_33	PHROG	phrog_1407	major tail protein	tail
UHGV-0073671_33	UniRef90	UniRef90_A0A380NJ51	Predicted secreted protein	NA
UHGV-0073671_33	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0073671_33	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0073671_33	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0073671_33	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0073671_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0073671_34	Structural annotation	PF11836	NA	NA
UHGV-0073671_35	eggNOG-mapper	1000569.HMPREF1040_0189	NA	NA
UHGV-0073671_36	PHROG	phrog_12798	NA	unknown function
UHGV-0073671_36	UniRef90	UniRef90_A0A3B9DV14	TMP_3 domain-containing protein	NA
UHGV-0073671_36	eggNOG-mapper	1000569.HMPREF1040_0188	tape measure	NA
UHGV-0073671_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0073671_36	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0073671_36	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0073671_36	Structural annotation	PF20155, TIGR01760, NF033930, COG3941	NA	NA
UHGV-0073671_37	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0073671_37	UniRef90	UniRef90_C9LPA8	TIGR02217 family protein	NA
UHGV-0073671_37	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0073671_37	Pfam	PF09343	NA	DUF2460
UHGV-0073671_37	COG	COG5448	NA	NA
UHGV-0073671_37	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0073671_38	PHROG	phrog_778	tail assembly protein	tail
UHGV-0073671_38	UniRef90	UniRef90_C9LPA9	NA	NA
UHGV-0073671_38	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-0073671_38	Pfam	PF09931	NA	DUF2163
UHGV-0073671_38	COG	COG5449	NA	NA
UHGV-0073671_38	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0073671_39	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0073671_39	PHROG	phrog_329	minor tail protein	tail
UHGV-0073671_39	UniRef90	UniRef90_C9LPB0	NlpC/P60 family protein	NA
UHGV-0073671_39	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0073671_39	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0073671_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0073671_39	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0073671_40	PHROG	phrog_1101	tail protein	tail
UHGV-0073671_40	UniRef90	UniRef90_A0A316LPF7	Phage-tail_3 domain-containing protein	NA
UHGV-0073671_40	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0073671_40	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0073671_40	COG	COG1511	NA	NA