UHGV-0073684

Genome information

Genome length 37,158 bps

CDS count 53

Completeness 88.88% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073684
vOTU ID	vOTU-022888
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_124269
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	80.93
Jumbo phage	No

Genome content
Genome length	37,158 bps
GC content	34.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.68%
Average CDS length	652.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073684_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0073684_1	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0073684_1	UniRef90	UniRef90_UPI00158E5AF9	phage regulatory protein/antirepressor Ant	NA
UHGV-0073684_1	eggNOG-mapper	1141106.CAIB01000151_gene1313	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0073684_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0073684_1	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0073684_3	PHROG	phrog_36581	NA	unknown function
UHGV-0073684_4	PHROG	phrog_369	NA	unknown function
UHGV-0073684_4	UniRef90	UniRef90_UPI000E055777	NA	NA
UHGV-0073684_4	Structural annotation	PF06900	NA	NA
UHGV-0073684_5	PHROG	phrog_11451	CI-like repressor	transcription regulation
UHGV-0073684_5	UniRef90	UniRef90_UPI000A0F7FEC	transcriptional regulator	NA
UHGV-0073684_6	PHROG	phrog_983	NA	unknown function
UHGV-0073684_6	UniRef90	UniRef90_A0A4Q9WQ82	NA	NA
UHGV-0073684_6	Pfam	PF10655	NA	DUF2482
UHGV-0073684_7	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0073684_7	PHROG	phrog_21084	recombinase	other
UHGV-0073684_7	UniRef90	UniRef90_A0A4Q9WQI3	Nuclease SbcCD subunit C	NA
UHGV-0073684_7	eggNOG-mapper	1147044.H9A0L2_9CAUD	AAA domain	NA
UHGV-0073684_7	Pfam	PF13476	AAA domain	AAA_23
UHGV-0073684_7	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0073684_8	PHROG	phrog_10455	NA	unknown function
UHGV-0073684_8	UniRef90	UniRef90_R7IT47	Conserved domain protein	NA
UHGV-0073684_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0073684_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0073684_9	UniRef90	UniRef90_A0A4Q9WP89	Recombinase	NA
UHGV-0073684_9	eggNOG-mapper	71366.O80082_9CAUD	DNA metabolic process	NA
UHGV-0073684_9	Pfam	PF03837	RecT family	RecT
UHGV-0073684_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0073684_9	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0073684_10	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0073684_10	UniRef90	UniRef90_A0A4Q9WQ21	MBL fold metallo-hydrolase	NA
UHGV-0073684_10	Structural annotation	PF12706, MF_01818, NF041851, COG5212	NA	NA
UHGV-0073684_11	PHROG	phrog_19181	NA	unknown function
UHGV-0073684_11	eggNOG-mapper	1147044.H9A0L5_9CAUD	NA	NA
UHGV-0073684_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0073684_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0073684_12	UniRef90	UniRef90_A0A4Q9WP97	Single-stranded DNA-binding protein	NA
UHGV-0073684_12	eggNOG-mapper	1147044.H9A0L6_9CAUD	Single-strand binding protein family	NA
UHGV-0073684_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0073684_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0073684_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0073684_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0073684_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073684_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073684_13	UniRef90	UniRef90_UPI00115EE2B2	helix-turn-helix domain-containing protein	NA
UHGV-0073684_13	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0073684_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073684_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0073684_13	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0073684_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0073684_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0073684_14	UniRef90	UniRef90_H9A0L8	Transcriptional regulator	NA
UHGV-0073684_14	eggNOG-mapper	458233.MCCL_0944	Helix-turn-helix XRE-family like proteins	NA
UHGV-0073684_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0073684_14	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0073684_14	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0073684_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0073684_15	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0073684_15	UniRef90	UniRef90_A0A4Q9WPC9	DnaD domain protein	NA
UHGV-0073684_15	eggNOG-mapper	1147044.H9A0L9_9CAUD	calcium ion binding	NA
UHGV-0073684_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0073684_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0073684_15	Structural annotation	PF09681, TIGR01446, NF033788, COG3935	NA	NA
UHGV-0073684_16	PHROG	phrog_36386	NA	unknown function
UHGV-0073684_20	PHROG	phrog_13598	NA	unknown function
UHGV-0073684_20	UniRef90	UniRef90_A0A0Z4J2P8	NA	NA
UHGV-0073684_21	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0073684_21	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0073684_21	UniRef90	UniRef90_A0A5R1C3N3	dUTP diphosphatase	NA
UHGV-0073684_21	eggNOG-mapper	279808.SH2368	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0073684_21	Pfam	PF00692	dUTPase	dUTPase
UHGV-0073684_21	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0073684_21	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0073684_21	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0073684_23	PHROG	phrog_152	RinB-like transcriptional activator	transcription regulation
UHGV-0073684_23	UniRef90	UniRef90_UPI000ABDEF59	transcriptional regulator	NA
UHGV-0073684_23	Pfam	PF06116	Transcriptional activator RinB	RinB
UHGV-0073684_23	Structural annotation	PF06116	NA	NA
UHGV-0073684_24	eggNOG-mapper	985762.SAGN_11262	NA	NA
UHGV-0073684_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0073684_25	UniRef90	UniRef90_A0A8I1X950	Transcriptional regulator	NA
UHGV-0073684_25	eggNOG-mapper	279808.SH2361	Transcriptional regulator, RinA family	NA
UHGV-0073684_25	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0073684_25	Structural annotation	PF05263, TIGR01636, COG1191	NA	NA
UHGV-0073684_26	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0073684_26	UniRef90	UniRef90_UPI0011A3C38D	DNA-binding protein	NA
UHGV-0073684_26	eggNOG-mapper	279808.SH2359	NA	NA
UHGV-0073684_26	Structural annotation	PF13022	NA	NA
UHGV-0073684_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073684_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0073684_27	UniRef90	UniRef90_A0A2W5L4L1	PBSX family phage terminase large subunit	NA
UHGV-0073684_27	eggNOG-mapper	1147042.H9A0U5_9CAUD	Phage terminase large subunit	NA
UHGV-0073684_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0073684_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0073684_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0073684_27	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0073684_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0073684_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0073684_28	UniRef90	UniRef90_H9A0N0	Portal protein	NA
UHGV-0073684_28	eggNOG-mapper	1147044.H9A0N0_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0073684_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0073684_28	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0073684_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0073684_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0073684_29	UniRef90	UniRef90_H9A0N1	Minor head protein	NA
UHGV-0073684_29	eggNOG-mapper	1147044.H9A0N1_9CAUD	Phage Mu protein F like protein	NA
UHGV-0073684_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0073684_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0073684_29	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0073684_30	PHROG	phrog_14482	NA	unknown function
UHGV-0073684_31	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0073684_31	UniRef90	UniRef90_H9A0N2	Scaffold protein	NA
UHGV-0073684_31	eggNOG-mapper	1147044.H9A0N2_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-0073684_31	Pfam	PF14265	NA	DUF4355
UHGV-0073684_31	Structural annotation	PF14265	NA	NA
UHGV-0073684_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0073684_32	UniRef90	UniRef90_H9A0N3	Major head protein	NA
UHGV-0073684_32	eggNOG-mapper	1147044.H9A0N3_9CAUD	NA	NA
UHGV-0073684_32	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0073684_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0073684_33	UniRef90	UniRef90_H9A0N4	DNA packaging minor head protein	NA
UHGV-0073684_33	eggNOG-mapper	1147044.H9A0N4_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0073684_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0073684_33	Structural annotation	PF05135	NA	NA
UHGV-0073684_34	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0073684_34	UniRef90	UniRef90_H9A0N5	Minor head protein	NA
UHGV-0073684_34	eggNOG-mapper	1034809.SLUG_08700	NA	NA
UHGV-0073684_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0073684_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0073684_35	UniRef90	UniRef90_A0A8F7EYP5	HK97 gp10 family phage protein	NA
UHGV-0073684_35	eggNOG-mapper	698737.SLGD_02248	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0073684_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0073684_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0073684_35	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0073684_36	PHROG	phrog_176	tail terminator	connector
UHGV-0073684_36	UniRef90	UniRef90_H9A0N7	Head structural protein	NA
UHGV-0073684_36	eggNOG-mapper	1159488.SEQMU2_01830	NA	NA
UHGV-0073684_36	Structural annotation	PF11367	NA	NA
UHGV-0073684_37	PHROG	phrog_238	major tail protein	tail
UHGV-0073684_37	UniRef90	UniRef90_H9A0N8	Major tail protein	NA
UHGV-0073684_37	eggNOG-mapper	575608.B7T0D7_9CAUD	Phage major tail protein 2	NA
UHGV-0073684_37	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0073684_37	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0073684_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0073684_38	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0073684_38	UniRef90	UniRef90_H9A0N9	Tail assembly protein	NA
UHGV-0073684_38	eggNOG-mapper	458233.MCCL_0931	Phage tail assembly chaperone protein, TAC	NA
UHGV-0073684_38	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0073684_39	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0073684_39	UniRef90	UniRef90_A0A077V0N7	Phi 11 orf41	NA
UHGV-0073684_39	eggNOG-mapper	1034809.SLUG_08750	NA	NA
UHGV-0073684_40	PHROG	phrog_37657	NA	unknown function
UHGV-0073684_40	UniRef90	UniRef90_H9A0P1	Tail tape measure protein	NA
UHGV-0073684_40	eggNOG-mapper	1147042.H9A0W0_9CAUD	NA	NA
UHGV-0073684_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0073684_41	UniRef90	UniRef90_H9A0P2	Tail protein	NA
UHGV-0073684_41	eggNOG-mapper	1034809.SLUG_08770	Phage tail protein	NA
UHGV-0073684_41	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0073684_41	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0073684_42	PHROG	phrog_663	minor head protein	head and packaging
UHGV-0073684_42	UniRef90	UniRef90_A0A4Q9WQ49	Prophage_tail domain-containing protein	NA
UHGV-0073684_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0073684_43	KOfam	K05996	cpt; carboxypeptidase T [EC:3.4.17.18]	NA
UHGV-0073684_43	PHROG	phrog_4722	zinc carboxypeptidase	other
UHGV-0073684_43	UniRef90	UniRef90_H9A0W3	Zn carboxypeptidase	NA
UHGV-0073684_43	eggNOG-mapper	1147042.H9A0W3_9CAUD	metallocarboxypeptidase activity	NA
UHGV-0073684_43	Pfam	PF00246	Zinc carboxypeptidase	Peptidase_M14
UHGV-0073684_44	PHROG	phrog_257	minor tail protein	tail
UHGV-0073684_44	UniRef90	UniRef90_H9A0P5	Tail protein	NA
UHGV-0073684_44	eggNOG-mapper	1034809.SLUG_08800	NA	NA
UHGV-0073684_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0073684_44	Structural annotation	PF10651, NF011813	NA	NA
UHGV-0073684_45	PHROG	phrog_2968	tail protein	tail
UHGV-0073684_45	eggNOG-mapper	1034809.SLUG_08810	NA	NA
UHGV-0073684_46	PHROG	phrog_2990	NA	unknown function
UHGV-0073684_46	eggNOG-mapper	1234593.ANBY01000020_gene1314	NA	NA
UHGV-0073684_47	KOfam	K23989	lytD, lytB; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]	NA
UHGV-0073684_47	PHROG	phrog_759	tail associated cell-wall hydrolase	other
UHGV-0073684_47	UniRef90	UniRef90_A0A4Q9WPF1	CHAP domain-containing protein	NA
UHGV-0073684_47	eggNOG-mapper	1147044.H9A0P7_9CAUD	peptidoglycan catabolic process	NA
UHGV-0073684_47	Pfam	PF05257	CHAP domain	CHAP
UHGV-0073684_47	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0073684_47	Structural annotation	PF01832, PF01510, NF008096, COG4193, COG3942, COG5632	NA	NA
UHGV-0073684_48	KOfam	K07603	COL17A, BP180; collagen type XVII alpha	NA
UHGV-0073684_48	PHROG	phrog_32409	tail fiber protein	tail
UHGV-0073684_48	UniRef90	UniRef90_UPI0004492C01	BppU family phage baseplate upper protein	NA
UHGV-0073684_48	eggNOG-mapper	1147044.H9A0P8_9CAUD	peptidoglycan catabolic process	NA
UHGV-0073684_48	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0073684_48	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0073684_48	Structural annotation	PF10651	NA	NA
UHGV-0073684_49	PHROG	phrog_1766	tail fiber protein	tail
UHGV-0073684_49	eggNOG-mapper	435838.HMPREF0786_00853	NA	NA
UHGV-0073684_50	PHROG	phrog_134	NA	unknown function
UHGV-0073684_50	UniRef90	UniRef90_A0A8H9BZ60	XkdX family protein	NA
UHGV-0073684_50	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0073684_50	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0073684_51	PHROG	phrog_4175	poly-gamma-glutamate hydrolase	other
UHGV-0073684_51	UniRef90	UniRef90_UPI00158DCF41	poly-gamma-glutamate hydrolase family protein	NA
UHGV-0073684_51	eggNOG-mapper	1147042.H9A0X2_9CAUD	Pfam:Gamma_PGA_hydro	NA
UHGV-0073684_51	Pfam	PF05908	Poly-gamma-glutamate hydrolase	Gamma_PGA_hydro
UHGV-0073684_52	UniRef90	UniRef90_H9A0Q1	Holin	NA
UHGV-0073684_52	eggNOG-mapper	1147044.H9A0Q1_9CAUD	Bacteriophage holin	NA
UHGV-0073684_52	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0073684_52	Structural annotation	COG5546	NA	NA
UHGV-0073684_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0073684_53	PHROG	phrog_635	endolysin	lysis
UHGV-0073684_53	UniRef90	UniRef90_A0A4Q9WQ56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0073684_53	eggNOG-mapper	1197952.I6T7G5_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0073684_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0073684_53	Pfam	PF05257	CHAP domain	CHAP