UHGV-0073714

Genome information

Genome length 21,732 bps

CDS count 25

Completeness 52.69% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073714
vOTU ID	vOTU-041285
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_134492
BioSample	SAMEA2737695
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.2
Jumbo phage	No

Genome content
Genome length	21,732 bps
GC content	59.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	92.69%
Average CDS length	809.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073714_1	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0073714_1	UniRef90	UniRef90_UPI000AA50A3B	NA	NA
UHGV-0073714_1	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-0073714_1	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0073714_1	Structural annotation	PF11985	NA	NA
UHGV-0073714_2	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0073714_2	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0073714_2	UniRef90	UniRef90_UPI001966E24A	antitermination protein NusG	NA
UHGV-0073714_2	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-0073714_2	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0073714_2	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0073714_2	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0073714_3	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-0073714_3	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0073714_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0073714_4	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0073714_4	UniRef90	UniRef90_A0A0D8J425	Terminase	NA
UHGV-0073714_4	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0073714_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0073714_4	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0073714_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0073714_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0073714_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0073714_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0073714_6	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0073714_6	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0073714_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0073714_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0073714_7	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0073714_7	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0073714_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0073714_7	COG	COG2369	NA	NA
UHGV-0073714_7	Structural annotation	PF06152	NA	NA
UHGV-0073714_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0073714_9	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0073714_9	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0073714_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0073714_9	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0073714_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0073714_10	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0073714_10	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0073714_11	PHROG	phrog_10541	NA	unknown function
UHGV-0073714_11	UniRef90	UniRef90_A0A0D8J3S8	Rho_N domain-containing protein	NA
UHGV-0073714_11	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0073714_11	COG	COG5492	NA	NA
UHGV-0073714_11	Structural annotation	PF09124	NA	NA
UHGV-0073714_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0073714_12	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0073714_12	Pfam	PF13262	NA	DUF4054
UHGV-0073714_13	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0073714_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0073714_14	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-0073714_14	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0073714_14	Structural annotation	PF11114	NA	NA
UHGV-0073714_15	PHROG	phrog_3266	tail completion	connector
UHGV-0073714_15	Structural annotation	PF20765	NA	NA
UHGV-0073714_16	PHROG	phrog_820	major tail protein	tail
UHGV-0073714_16	COG	COG5492	NA	NA
UHGV-0073714_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0073714_18	PHROG	phrog_706	NA	unknown function
UHGV-0073714_18	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0073714_18	eggNOG-mapper	718252.FP2_06590	Bacteriophage Gp15 protein	NA
UHGV-0073714_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0073714_19	PHROG	phrog_23464	NA	unknown function
UHGV-0073714_19	eggNOG-mapper	1308866.J416_09524	nuclear chromosome segregation	NA
UHGV-0073714_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0073714_19	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0073714_20	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0073714_20	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0073714_20	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0073714_21	PHROG	phrog_26795	NA	unknown function
UHGV-0073714_21	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0073714_21	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0073714_21	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0073714_23	Structural annotation	PF10651, COG4675	NA	NA
UHGV-0073714_24	KOfam	K00091	E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219]	NA
UHGV-0073714_24	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0073714_24	UniRef90	UniRef90_G9RQK5	Epimerase domain-containing protein	NA
UHGV-0073714_24	eggNOG-mapper	665956.HMPREF1032_02524	NAD dependent epimerase dehydratase family	NA
UHGV-0073714_24	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0073714_24	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0073714_25	KOfam	K22907	ppgS; polyprenyl-phospho-N-acetylgalactosaminyl synthase	NA
UHGV-0073714_25	UniRef90	UniRef90_A0A372X039	Glycosyltransferase	NA
UHGV-0073714_25	eggNOG-mapper	665956.HMPREF1032_02525	GtrA-like protein	NA
UHGV-0073714_25	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0073714_25	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA