UHGV-0073929

Genome information

Genome length 34,444 bps

CDS count 52

Completeness 59.74% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0073929
vOTU ID	vOTU-038911
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126265
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.6
Jumbo phage	No

Genome content
Genome length	34,444 bps
GC content	50.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	87.12%
Average CDS length	579.12 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0073929_1	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0073929_2	PHROG	phrog_16490	NA	unknown function
UHGV-0073929_2	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0073929_8	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073929_8	UniRef90	UniRef90_A0A2Z4QA49	AP2 protein	NA
UHGV-0073929_8	eggNOG-mapper	927704.SELR_12480	NA	NA
UHGV-0073929_9	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0073929_9	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0073929_10	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0073929_10	UniRef90	UniRef90_A0A846J416	Sugar-phospahte nucleotidyltransferase	NA
UHGV-0073929_10	eggNOG-mapper	1235793.C809_00185	NA	NA
UHGV-0073929_10	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0073929_12	PHROG	phrog_15303	NA	unknown function
UHGV-0073929_14	KOfam	K07273	acm; lysozyme	NA
UHGV-0073929_14	PHROG	phrog_291	endolysin	lysis
UHGV-0073929_14	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0073929_14	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0073929_14	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0073929_14	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0073929_14	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0073929_15	UniRef90	UniRef90_A0A6A8KSZ5	XkdX family protein	NA
UHGV-0073929_15	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0073929_15	Structural annotation	PF09693	NA	NA
UHGV-0073929_17	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0073929_17	UniRef90	UniRef90_A0A329UVI2	NA	NA
UHGV-0073929_17	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0073929_17	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0073929_19	PHROG	phrog_18725	NA	unknown function
UHGV-0073929_19	UniRef90	UniRef90_UPI001D0EF571	Ig-like domain-containing protein	NA
UHGV-0073929_19	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0073929_19	COG	COG5492	NA	NA
UHGV-0073929_19	Structural annotation	PF15417, NF041539	NA	NA
UHGV-0073929_20	PHROG	phrog_13879	NA	unknown function
UHGV-0073929_20	eggNOG-mapper	1007103.AFHW01000096_gene3259	NA	NA
UHGV-0073929_20	Pfam	PF19789	NA	DUF6273
UHGV-0073929_20	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0073929_21	PHROG	phrog_1194	NA	unknown function
UHGV-0073929_21	Pfam	PF20458	NA	DUF6711
UHGV-0073929_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0073929_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0073929_22	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0073929_22	Pfam	PF05746	DALR anticodon binding domain	DALR_1
UHGV-0073929_22	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0073929_23	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0073929_24	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0073929_24	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0073929_24	Pfam	PF16478	NA	DUF5055
UHGV-0073929_24	Structural annotation	PF16478	NA	NA
UHGV-0073929_25	PHROG	phrog_158	major tail protein	tail
UHGV-0073929_25	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0073929_25	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0073929_25	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0073929_26	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0073929_28	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0073929_28	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0073929_29	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0073929_29	Structural annotation	TIGR01560	NA	NA
UHGV-0073929_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0073929_30	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0073929_30	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0073929_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0073929_30	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0073929_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0073929_33	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0073929_33	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0073929_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0073929_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0073929_36	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0073929_36	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0073929_36	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0073929_36	COG	COG5410	NA	NA
UHGV-0073929_36	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0073929_37	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0073929_40	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0073929_40	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0073929_40	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0073929_40	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0073929_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0073929_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0073929_40	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0073929_41	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0073929_41	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0073929_43	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0073929_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0073929_44	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0073929_44	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0073929_44	eggNOG-mapper	903814.ELI_3141	AntA/AntB antirepressor	NA
UHGV-0073929_44	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0073929_44	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0073929_44	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0073929_44	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0073929_46	PHROG	phrog_14275	NA	unknown function
UHGV-0073929_46	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0073929_46	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0073929_46	Structural annotation	PF13157, MF_01537, NF007875, COG3123	NA	NA
UHGV-0073929_50	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0073929_50	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-0073929_50	COG	COG5377	Phage-related protein, predicted endonuclease	NA