UHGV-0074035

Genome information

Genome length 40,982 bps

CDS count 52

Completeness 74.05% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074035
vOTU ID	vOTU-029376
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126475
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.63
Jumbo phage	No

Genome content
Genome length	40,982 bps
GC content	43.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.28%
Average CDS length	737.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074035_1	UniRef90	UniRef90_A0A354IFU0	GGGtGRT protein (Fragment)	NA
UHGV-0074035_1	eggNOG-mapper	411459.RUMOBE_02671	NA	NA
UHGV-0074035_1	Pfam	PF14057	GGGtGRT protein	GGGtGRT
UHGV-0074035_2	KOfam	K14059	int; integrase	NA
UHGV-0074035_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0074035_2	UniRef90	UniRef90_A0A416VJV7	Site-specific integrase	NA
UHGV-0074035_2	eggNOG-mapper	665950.HMPREF1025_01927	Phage integrase family	NA
UHGV-0074035_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0074035_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0074035_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0074035_3	eggNOG-mapper	1075090.GOAMR_64_00710	NA	NA
UHGV-0074035_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0074035_3	Structural annotation	PF06114, PF09225	NA	NA
UHGV-0074035_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0074035_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0074035_4	UniRef90	UniRef90_A0A4R3JHD0	Transcriptional regulator with XRE-family HTH domain	NA
UHGV-0074035_4	eggNOG-mapper	1410661.JNKW01000002_gene1382	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0074035_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074035_4	COG	COG2522	Predicted transcriptional regulator, contains XRE-type HTH domain	NA
UHGV-0074035_5	UniRef90	UniRef90_A0A173Z7J8	HTH cro/C1-type domain-containing protein	NA
UHGV-0074035_5	eggNOG-mapper	875454.BAEW01000002_gene507	domain protein	NA
UHGV-0074035_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0074035_6	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0074035_6	UniRef90	UniRef90_A0A4R3JHT8	Helix-turn-helix protein	NA
UHGV-0074035_6	eggNOG-mapper	997350.HMPREF9129_1677	sequence-specific DNA binding	NA
UHGV-0074035_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074035_6	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0074035_6	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0074035_8	KOfam	K19465	MGME1, DDK1; mitochondrial genome maintenance exonuclease 1 [EC:3.1.-.-]	NA
UHGV-0074035_8	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074035_8	UniRef90	UniRef90_A0A2K9V3J9	Exonuclease	NA
UHGV-0074035_8	eggNOG-mapper	1539298.JO41_12685	NA	NA
UHGV-0074035_8	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0074035_8	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0074035_9	PHROG	phrog_10477	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074035_10	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0074035_10	UniRef90	UniRef90_A0A4V2UPD5	Phage recombination protein Bet	NA
UHGV-0074035_10	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0074035_10	Pfam	PF03837	RecT family	RecT
UHGV-0074035_10	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0074035_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0074035_10	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0074035_11	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0074035_11	eggNOG-mapper	1031288.AXAA01000044_gene1970	NA	NA
UHGV-0074035_11	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0074035_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0074035_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0074035_12	UniRef90	UniRef90_R6JHV2	AAA domain-containing protein	NA
UHGV-0074035_12	eggNOG-mapper	411459.RUMOBE_01035	NA	NA
UHGV-0074035_12	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0074035_12	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0074035_12	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0074035_12	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0074035_13	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0074035_13	UniRef90	UniRef90_A0A173Z851	Transcriptional repressor DicA	NA
UHGV-0074035_13	eggNOG-mapper	520999.PROVALCAL_01170	Peptidase S24-like	NA
UHGV-0074035_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074035_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0074035_13	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0074035_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0074035_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0074035_14	UniRef90	UniRef90_A0A173Z819	Holliday junction resolvase	NA
UHGV-0074035_14	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0074035_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0074035_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0074035_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0074035_16	PHROG	phrog_398	NA	unknown function
UHGV-0074035_16	UniRef90	UniRef90_A0A4R3JHT0	Putative HNHc nuclease	NA
UHGV-0074035_16	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0074035_16	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0074035_16	Structural annotation	PF16784	NA	NA
UHGV-0074035_17	PHROG	phrog_1558	NA	unknown function
UHGV-0074035_17	UniRef90	UniRef90_A0A412NHJ2	HTH domain-containing protein	NA
UHGV-0074035_17	eggNOG-mapper	665956.HMPREF1032_03078	NA	NA
UHGV-0074035_17	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0074035_18	PHROG	phrog_18237	NA	unknown function
UHGV-0074035_19	PHROG	phrog_2450	NA	unknown function
UHGV-0074035_19	UniRef90	UniRef90_A0A7X7IHC3	NA	NA
UHGV-0074035_19	eggNOG-mapper	1200557.JHWV01000006_gene1736	NA	NA
UHGV-0074035_19	Structural annotation	COG3189	NA	NA
UHGV-0074035_20	PHROG	phrog_7858	NA	unknown function
UHGV-0074035_20	UniRef90	UniRef90_UPI0014872BB8	peptidoglycan-binding protein	NA
UHGV-0074035_20	eggNOG-mapper	1200557.JHWV01000006_gene1735	NA	NA
UHGV-0074035_20	Structural annotation	PF11039, PF03602, MF_02125, MF_00084, NF007527, TIGR00571, COG3981, COG0338	NA	NA
UHGV-0074035_21	PHROG	phrog_7405	NA	unknown function
UHGV-0074035_21	UniRef90	UniRef90_A0A4R3JHS1	ParB-like nuclease family protein	NA
UHGV-0074035_21	eggNOG-mapper	1200557.JHWV01000006_gene1734	ParB-like nuclease domain	NA
UHGV-0074035_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0074035_21	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0074035_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0074035_22	UniRef90	UniRef90_A0A4R3JJP5	Homeodomain-like domain-containing protein	NA
UHGV-0074035_22	eggNOG-mapper	1200557.JHWV01000006_gene1733	transposase activity	NA
UHGV-0074035_22	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0074035_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0074035_22	Structural annotation	PF07141	NA	NA
UHGV-0074035_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0074035_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0074035_23	UniRef90	UniRef90_A0A4R3JJ52	PBSX family phage terminase large subunit	NA
UHGV-0074035_23	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0074035_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0074035_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0074035_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0074035_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0074035_24	UniRef90	UniRef90_A0A1C5UE68	Phage portal protein, putative, A118 family	NA
UHGV-0074035_24	eggNOG-mapper	632245.CLP_1642	NA	NA
UHGV-0074035_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0074035_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0074035_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0074035_25	UniRef90	UniRef90_A0A373PU57	Phage capsid protein	NA
UHGV-0074035_25	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0074035_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0074035_25	COG	COG2369	NA	NA
UHGV-0074035_25	Structural annotation	PF06152	NA	NA
UHGV-0074035_26	PHROG	phrog_1048	NA	unknown function
UHGV-0074035_26	UniRef90	UniRef90_UPI0018AA3785	NA	NA
UHGV-0074035_26	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0074035_26	Pfam	PF11195	NA	DUF2829
UHGV-0074035_26	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0074035_26	Structural annotation	PF11195	NA	NA
UHGV-0074035_27	PHROG	phrog_13199	NA	unknown function
UHGV-0074035_27	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0074035_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0074035_28	UniRef90	UniRef90_A0A1C5UDW0	Phage minor structural protein GP20	NA
UHGV-0074035_28	eggNOG-mapper	665956.HMPREF1032_03067	Phage minor structural protein GP20	NA
UHGV-0074035_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0074035_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0074035_29	UniRef90	UniRef90_UPI0018A95C52	capsid protein	NA
UHGV-0074035_29	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-0074035_29	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0074035_30	PHROG	phrog_1378	NA	unknown function
UHGV-0074035_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0074035_32	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0074035_33	PHROG	phrog_3366	NA	unknown function
UHGV-0074035_33	Pfam	PF20536	NA	DUF6751
UHGV-0074035_33	Structural annotation	PF20536	NA	NA
UHGV-0074035_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0074035_34	UniRef90	UniRef90_UPI001D074B8B	minor capsid protein	NA
UHGV-0074035_34	eggNOG-mapper	1321782.HMPREF1986_02271	NA	NA
UHGV-0074035_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0074035_34	Structural annotation	PF11114	NA	NA
UHGV-0074035_35	PHROG	phrog_3266	tail completion	connector
UHGV-0074035_35	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0074035_35	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0074035_35	Structural annotation	PF12691	NA	NA
UHGV-0074035_36	PHROG	phrog_3099	NA	unknown function
UHGV-0074035_36	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0074035_36	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0074035_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0074035_37	PHROG	phrog_4450	NA	unknown function
UHGV-0074035_37	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-0074035_37	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0074035_37	Pfam	PF20378	NA	DUF6673
UHGV-0074035_37	Structural annotation	PF20378	NA	NA
UHGV-0074035_38	PHROG	phrog_706	NA	unknown function
UHGV-0074035_38	UniRef90	UniRef90_A0A1C5UCZ9	Bacteriophage Gp15 protein	NA
UHGV-0074035_38	eggNOG-mapper	931276.Cspa_c07530	Bacteriophage Gp15 protein	NA
UHGV-0074035_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0074035_38	Structural annotation	PF06854	NA	NA
UHGV-0074035_39	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0074035_39	UniRef90	UniRef90_A0A1C5UCW2	Phage-related protein	NA
UHGV-0074035_39	eggNOG-mapper	632245.CLP_1658	Phage tail tape measure protein, TP901 family	NA
UHGV-0074035_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0074035_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0074035_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0074035_39	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0074035_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0074035_40	UniRef90	UniRef90_A0A1C5UDN1	Phage-related protein	NA
UHGV-0074035_40	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0074035_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0074035_40	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0074035_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0074035_40	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0074035_41	PHROG	phrog_9886	NA	unknown function
UHGV-0074035_41	UniRef90	UniRef90_A0A1C5UDJ9	Phage minor structural protein, N-terminal region	NA
UHGV-0074035_41	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0074035_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0074035_41	COG	COG4926	Phage-related protein	NA
UHGV-0074035_41	Structural annotation	PF06605, PF04862, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-0074035_43	PHROG	phrog_17134	NA	unknown function
UHGV-0074035_44	PHROG	phrog_19280	NA	unknown function
UHGV-0074035_44	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-0074035_44	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0074035_44	Pfam	PF19789	NA	DUF6273
UHGV-0074035_44	Structural annotation	PF19789	NA	NA
UHGV-0074035_45	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0074035_45	eggNOG-mapper	1203606.HMPREF1526_01922	NA	NA
UHGV-0074035_45	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0074035_46	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0074035_46	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0074035_46	UniRef90	UniRef90_A0A1C5PK20	Retron-type reverse transcriptase	NA
UHGV-0074035_46	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0074035_46	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0074035_46	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0074035_46	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0074035_46	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0074035_48	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0074035_49	eggNOG-mapper	537007.BLAHAN_05249	NA	NA
UHGV-0074035_50	PHROG	phrog_38777	NA	unknown function
UHGV-0074035_50	eggNOG-mapper	457412.RSAG_01108	NA	NA
UHGV-0074035_51	PHROG	phrog_34925	NA	unknown function
UHGV-0074035_51	UniRef90	UniRef90_A0A7X9BUZ9	Aminopeptidase	NA
UHGV-0074035_51	eggNOG-mapper	411459.RUMOBE_01083	NA	NA
UHGV-0074035_51	Structural annotation	PF06946	NA	NA
UHGV-0074035_52	UniRef90	UniRef90_UPI0011606AAD	CHAP domain-containing protein	NA
UHGV-0074035_52	eggNOG-mapper	411459.RUMOBE_01085	NA	NA