UHGV-0074219

Genome information

Genome length 31,263 bps

CDS count 42

Completeness 83.83% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074219
vOTU ID	vOTU-026570
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119452
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.93
Jumbo phage	No

Genome content
Genome length	31,263 bps
GC content	49.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.95%
Average CDS length	687.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074219_1	PHROG	phrog_660	NA	unknown function
UHGV-0074219_1	UniRef90	UniRef90_UPI00069DBAE0	NA	NA
UHGV-0074219_1	eggNOG-mapper	1147140.H6WRY2_9CAUD	NA	NA
UHGV-0074219_2	PHROG	phrog_2529	NA	unknown function
UHGV-0074219_2	UniRef90	UniRef90_Q8HAF3	Orf-101	NA
UHGV-0074219_2	eggNOG-mapper	173443.Q8HAF3_BPST6	NA	NA
UHGV-0074219_2	Structural annotation	PF02427, MF_00613, NF002745, COG2163	NA	NA
UHGV-0074219_4	PHROG	phrog_4595	NA	unknown function
UHGV-0074219_4	eggNOG-mapper	220341.16502183	NA	NA
UHGV-0074219_4	Structural annotation	PF20090, NF041544	NA	NA
UHGV-0074219_5	PHROG	phrog_1588	NA	unknown function
UHGV-0074219_5	UniRef90	UniRef90_A0A483KTW8	NA	NA
UHGV-0074219_5	eggNOG-mapper	573.JG24_10890	Recombination enhancement, RecA-dependent nuclease	NA
UHGV-0074219_5	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-0074219_5	Structural annotation	PF16786	NA	NA
UHGV-0074219_6	UniRef90	UniRef90_UPI001C7D1C45	DNA cytosine methyltransferase	NA
UHGV-0074219_6	eggNOG-mapper	571.MC52_14965	C-5 cytosine-specific DNA methylase	NA
UHGV-0074219_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0074219_7	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0074219_7	UniRef90	UniRef90_UPI0002AA626B	MT-A70 family methyltransferase	NA
UHGV-0074219_7	eggNOG-mapper	640513.Entas_3091	Belongs to the MT-A70-like family	NA
UHGV-0074219_7	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0074219_7	Pfam	PF05063	MT-A70	MT-A70
UHGV-0074219_7	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0074219_7	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0074219_8	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0074219_8	UniRef90	UniRef90_UPI000E2D7134	NA	NA
UHGV-0074219_8	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-0074219_8	Pfam	PF06576	NA	DUF1133
UHGV-0074219_8	Structural annotation	PF06576	NA	NA
UHGV-0074219_9	PHROG	phrog_20	holin	lysis
UHGV-0074219_9	UniRef90	UniRef90_A0A6G5YG36	MFS domain-containing protein	NA
UHGV-0074219_9	eggNOG-mapper	1028307.EAE_22355	Bacteriophage P21 holin S	NA
UHGV-0074219_9	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0074219_9	Structural annotation	PF04971	NA	NA
UHGV-0074219_10	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0074219_10	PHROG	phrog_7	endolysin	lysis
UHGV-0074219_10	UniRef90	UniRef90_A0A0P7P9C5	Lysozyme	NA
UHGV-0074219_10	eggNOG-mapper	10713.M9P0E5_BPPH8	Phage lysozyme	NA
UHGV-0074219_10	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0074219_10	HAMAP	MF_04110	Endolysin	NA
UHGV-0074219_10	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0074219_11	PHROG	phrog_214	Rz-like spanin	lysis
UHGV-0074219_11	UniRef90	UniRef90_B5Y0G0	Putative phage protein	NA
UHGV-0074219_11	eggNOG-mapper	571.MC52_23615	NA	NA
UHGV-0074219_12	PHROG	phrog_1453	NA	unknown function
UHGV-0074219_12	UniRef90	UniRef90_A0A2G0PU97	UpfA	NA
UHGV-0074219_12	eggNOG-mapper	573.JG24_10955	NA	NA
UHGV-0074219_13	PHROG	phrog_5415	NA	unknown function
UHGV-0074219_14	PHROG	phrog_571	NA	unknown function
UHGV-0074219_14	UniRef90	UniRef90_UPI00066758B0	NA	NA
UHGV-0074219_14	eggNOG-mapper	571.MC52_01440	NA	NA
UHGV-0074219_14	Pfam	PF10834	NA	DUF2560
UHGV-0074219_14	Structural annotation	PF10834	NA	NA
UHGV-0074219_15	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074219_15	UniRef90	UniRef90_A0A564HZZ3	HNHc domain-containing protein	NA
UHGV-0074219_15	eggNOG-mapper	35703.DQ02_24230	HNH nucleases	NA
UHGV-0074219_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0074219_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0074219_16	UniRef90	UniRef90_A0A377ZY98	Phage terminase small subunit	NA
UHGV-0074219_16	eggNOG-mapper	35703.DQ02_24235	phage terminase small subunit	NA
UHGV-0074219_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0074219_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0074219_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0074219_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0074219_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0074219_17	UniRef90	UniRef90_A0A377ZYG0	Phage terminase large subunit	NA
UHGV-0074219_17	eggNOG-mapper	573.JG24_10975	terminase	NA
UHGV-0074219_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0074219_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0074219_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0074219_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0074219_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0074219_18	UniRef90	UniRef90_UPI001F0F417F	phage portal protein	NA
UHGV-0074219_18	eggNOG-mapper	35703.DQ02_24245	portal protein	NA
UHGV-0074219_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0074219_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0074219_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0074219_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0074219_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0074219_19	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0074219_19	UniRef90	UniRef90_A0A855F906	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0074219_19	eggNOG-mapper	35703.DQ02_24250	Clp protease	NA
UHGV-0074219_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0074219_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0074219_19	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0074219_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0074219_20	UniRef90	UniRef90_A0A482J371	Major capsid protein	NA
UHGV-0074219_20	eggNOG-mapper	1147150.K7PM57_9CAUD	peptidase activity	NA
UHGV-0074219_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0074219_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0074219_21	PHROG	phrog_5463	NA	unknown function
UHGV-0074219_21	eggNOG-mapper	1399774.JDWH01000034_gene1973	NA	NA
UHGV-0074219_21	Structural annotation	PF01281	NA	NA
UHGV-0074219_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0074219_22	UniRef90	UniRef90_A0A447RK36	Phage gp6-like head-tail connector protein	NA
UHGV-0074219_22	eggNOG-mapper	35703.DQ02_21680	Phage gp6-like head-tail connector protein	NA
UHGV-0074219_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0074219_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0074219_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0074219_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-0074219_23	UniRef90	UniRef90_A0A170RNN6	Head-tail adaptor protein	NA
UHGV-0074219_23	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-0074219_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0074219_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0074219_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0074219_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0074219_24	PHROG	phrog_23409	NA	unknown function
UHGV-0074219_24	UniRef90	UniRef90_A0A8I2IXX0	HK97 gp10 family phage protein	NA
UHGV-0074219_24	eggNOG-mapper	571.MC52_01380	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0074219_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0074219_24	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0074219_24	Structural annotation	TIGR01725	NA	NA
UHGV-0074219_25	PHROG	phrog_347	tail terminator	connector
UHGV-0074219_25	UniRef90	UniRef90_A0A163VZX5	NA	NA
UHGV-0074219_25	eggNOG-mapper	571.MC52_01375	Structural component (Phage or Prophage Related)	NA
UHGV-0074219_25	Pfam	PF11367	NA	DUF3168
UHGV-0074219_25	Structural annotation	PF11367	NA	NA
UHGV-0074219_26	PHROG	phrog_158	major tail protein	tail
UHGV-0074219_26	UniRef90	UniRef90_A0A6N3HQC8	Ig-like domain-containing protein	NA
UHGV-0074219_26	eggNOG-mapper	571.MC52_01370	NA	NA
UHGV-0074219_26	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0074219_26	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-0074219_27	PHROG	phrog_14766	tail protein	tail
UHGV-0074219_27	UniRef90	UniRef90_A0A443WE36	Phage tail protein	NA
UHGV-0074219_27	eggNOG-mapper	571.MC52_01365	tail assembly chaperone	NA
UHGV-0074219_27	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0074219_27	Structural annotation	PF06222	NA	NA
UHGV-0074219_28	PHROG	phrog_14766	tail protein	tail
UHGV-0074219_28	UniRef90	UniRef90_UPI001CCAF7E3	NA	NA
UHGV-0074219_28	eggNOG-mapper	571.MC52_01360	NA	NA
UHGV-0074219_28	Pfam	PF13227	NA	DUF4035
UHGV-0074219_28	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0074219_30	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0074219_30	UniRef90	UniRef90_A0A6P1UUS1	Phage tail tape measure protein	NA
UHGV-0074219_30	eggNOG-mapper	571.MC52_01350	tape measure protein	NA
UHGV-0074219_30	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0074219_30	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0074219_30	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0074219_30	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0074219_30	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0074219_30	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0074219_31	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0074219_31	UniRef90	UniRef90_A0A163VZJ0	Membrane protein	NA
UHGV-0074219_31	eggNOG-mapper	571.MC52_01345	NA	NA
UHGV-0074219_31	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0074219_32	PHROG	phrog_396	minor tail protein	tail
UHGV-0074219_32	UniRef90	UniRef90_A0A168QM81	ArsR family transcriptional regulator	NA
UHGV-0074219_32	eggNOG-mapper	573.JG24_11050	NA	NA
UHGV-0074219_32	Pfam	PF08875	NA	DUF1833
UHGV-0074219_32	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0074219_33	PHROG	phrog_329	minor tail protein	tail
UHGV-0074219_33	UniRef90	UniRef90_A0A1D8JXW3	Nitrite transporter	NA
UHGV-0074219_33	eggNOG-mapper	573.JG24_11055	NA	NA
UHGV-0074219_33	Structural annotation	TIGR02219	NA	NA
UHGV-0074219_34	PHROG	phrog_469	tail protein	tail
UHGV-0074219_34	UniRef90	UniRef90_A0A2J4VCS0	Kinase	NA
UHGV-0074219_34	eggNOG-mapper	571.MC52_01330	cellulase activity	NA
UHGV-0074219_34	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0074219_34	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0074219_34	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0074219_34	Structural annotation	PF13550, NF040662, TIGR01683, COG4733, COG2104	NA	NA
UHGV-0074219_35	PHROG	phrog_9750	NA	unknown function
UHGV-0074219_35	UniRef90	UniRef90_UPI001F014BA3	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0074219_35	eggNOG-mapper	571.MC52_01315	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0074219_35	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0074219_35	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0074219_35	Structural annotation	PF05048, TIGR03808, COG3420	NA	NA
UHGV-0074219_37	PHROG	phrog_5939	tail protein	tail
UHGV-0074219_37	UniRef90	UniRef90_UPI0011578DC3	phage tail tape measure protein	NA
UHGV-0074219_37	eggNOG-mapper	696747.NIES39_C01910	NA	NA
UHGV-0074219_37	Structural annotation	PF13385, NF033675	NA	NA
UHGV-0074219_38	KOfam	K18814	ictB; putative inorganic carbon (hco3(-)) transporter	NA
UHGV-0074219_38	UniRef90	UniRef90_A0A7U4GVP0	Polymerase	NA
UHGV-0074219_38	Pfam	PF04932	O-Antigen ligase	Wzy_C
UHGV-0074219_39	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0074219_39	PHROG	phrog_14442	tail protein	tail
UHGV-0074219_39	UniRef90	UniRef90_UPI0012B81ADD	phage tail protein	NA
UHGV-0074219_39	eggNOG-mapper	1236000.L0ASZ2_9CAUD	NA	NA
UHGV-0074219_39	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0074219_40	PHROG	phrog_3893	NA	unknown function
UHGV-0074219_40	eggNOG-mapper	571.MC52_15285	NA	NA
UHGV-0074219_41	PHROG	phrog_3469	UmuD-like protein	DNA, RNA and nucleotide metabolism
UHGV-0074219_41	UniRef90	UniRef90_A0A168QEF6	Protein UmuD-like protein	NA
UHGV-0074219_41	eggNOG-mapper	571.MC52_15290	NA	NA
UHGV-0074219_41	Structural annotation	PF16452, MF_00015, NF007621, COG2932	NA	NA