UHGV-0074239

Genome information

Genome length 22,723 bps

CDS count 51

Completeness 50.12% (medium-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074239
vOTU ID	vOTU-026647
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_116404
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.2
Jumbo phage	No

Genome content
Genome length	22,723 bps
GC content	29.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	85.92%
Average CDS length	384.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074239_1	PHROG	phrog_199	holin	lysis
UHGV-0074239_1	UniRef90	UniRef90_UPI0018A11495	phage holin family protein	NA
UHGV-0074239_1	eggNOG-mapper	1280689.AUJC01000003_gene982	Bacteriophage holin family	NA
UHGV-0074239_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0074239_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0074239_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0074239_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0074239_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0074239_2	PHROG	phrog_435	endolysin	lysis
UHGV-0074239_2	UniRef90	UniRef90_UPI00164BDABC	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074239_2	eggNOG-mapper	999413.HMPREF1094_01993	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074239_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0074239_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074239_3	eggNOG-mapper	1414720.CBYM010000071_gene3375	Helix-turn-helix domain of resolvase	NA
UHGV-0074239_3	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0074239_5	eggNOG-mapper	1414720.CBYM010000001_gene722	NA	NA
UHGV-0074239_6	UniRef90	UniRef90_UPI00082B8CF9	NA	NA
UHGV-0074239_6	Pfam	PF19807	NA	DUF6290
UHGV-0074239_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0074239_7	PHROG	phrog_3502	NA	unknown function
UHGV-0074239_7	UniRef90	UniRef90_UPI001AE48220	winged helix-turn-helix transcriptional regulator	NA
UHGV-0074239_7	eggNOG-mapper	521460.Athe_2440	domain protein	NA
UHGV-0074239_7	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0074239_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0074239_7	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0074239_8	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0074239_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0074239_8	UniRef90	UniRef90_UPI000C08CA24	helix-turn-helix domain-containing protein	NA
UHGV-0074239_8	eggNOG-mapper	1415774.U728_876	Helix-turn-helix XRE-family like proteins	NA
UHGV-0074239_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0074239_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074239_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074239_8	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0074239_9	UniRef90	UniRef90_UPI000C07BC9E	DNA-binding protein	NA
UHGV-0074239_9	eggNOG-mapper	86416.Clopa_4316	NA	NA
UHGV-0074239_10	KOfam	K14059	int; integrase	NA
UHGV-0074239_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0074239_10	UniRef90	UniRef90_UPI00164B0EA5	site-specific integrase	NA
UHGV-0074239_10	eggNOG-mapper	641107.CDLVIII_1400	Belongs to the 'phage' integrase family	NA
UHGV-0074239_10	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0074239_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0074239_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0074239_10	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0074239_11	PHROG	phrog_87	metallo-protease	other
UHGV-0074239_11	UniRef90	UniRef90_UPI00164A1DF0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0074239_11	eggNOG-mapper	1280692.AUJL01000009_gene2969	IrrE N-terminal-like domain	NA
UHGV-0074239_11	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0074239_11	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0074239_11	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0074239_12	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0074239_12	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0074239_12	UniRef90	UniRef90_UPI00164B51A0	helix-turn-helix domain-containing protein	NA
UHGV-0074239_12	eggNOG-mapper	1280692.AUJL01000009_gene2970	Helix-turn-helix XRE-family like proteins	NA
UHGV-0074239_12	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0074239_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074239_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074239_12	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0074239_13	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-0074239_13	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0074239_13	UniRef90	UniRef90_UPI001A9B8385	helix-turn-helix transcriptional regulator	NA
UHGV-0074239_13	eggNOG-mapper	86416.Clopa_0552	helix-turn-helix	NA
UHGV-0074239_13	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0074239_13	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0074239_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074239_13	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-0074239_14	UniRef90	UniRef90_UPI00164C1D56	helix-turn-helix domain-containing protein	NA
UHGV-0074239_14	eggNOG-mapper	1196322.A370_05750	Helix-turn-helix domain	NA
UHGV-0074239_14	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0074239_14	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0074239_14	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0074239_15	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0074239_15	UniRef90	UniRef90_UPI00058DF464	ORF6C domain-containing protein	NA
UHGV-0074239_15	eggNOG-mapper	1499683.CCFF01000014_gene3566	Phage regulatory protein	NA
UHGV-0074239_15	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0074239_15	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0074239_15	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0074239_15	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0074239_15	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0074239_17	PHROG	phrog_22662	NA	unknown function
UHGV-0074239_18	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0074239_20	PHROG	phrog_11013	NA	unknown function
UHGV-0074239_20	UniRef90	UniRef90_UPI000EB10890	DNA-entry nuclease	NA
UHGV-0074239_20	eggNOG-mapper	445335.CBN_3011	NA	NA
UHGV-0074239_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0074239_23	UniRef90	UniRef90_UPI00101C7D8F	siphovirus Gp157 family protein	NA
UHGV-0074239_23	eggNOG-mapper	1499683.CCFF01000014_gene3558	Siphovirus Gp157	NA
UHGV-0074239_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0074239_23	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0074239_25	PHROG	phrog_14970	NA	unknown function
UHGV-0074239_25	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0074239_25	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0074239_25	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0074239_25	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0074239_25	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0074239_26	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0074239_26	UniRef90	UniRef90_UPI000EA32791	DnaD domain protein	NA
UHGV-0074239_26	eggNOG-mapper	1414720.CBYM010000040_gene1625	DnaD domain protein	NA
UHGV-0074239_26	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0074239_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0074239_26	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0074239_28	PHROG	phrog_17705	NA	unknown function
UHGV-0074239_29	PHROG	phrog_3497	NA	unknown function
UHGV-0074239_29	UniRef90	UniRef90_A0A174EZL9	NA	NA
UHGV-0074239_29	eggNOG-mapper	1280689.AUJC01000003_gene939	NA	NA
UHGV-0074239_29	Structural annotation	COG5126	NA	NA
UHGV-0074239_30	PHROG	phrog_1389	NA	unknown function
UHGV-0074239_30	eggNOG-mapper	536233.CLO_1823	NA	NA
UHGV-0074239_30	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0074239_31	PHROG	phrog_3458	NA	unknown function
UHGV-0074239_31	eggNOG-mapper	1540090.A0A0A0RMG9_9CAUD	NA	NA
UHGV-0074239_32	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0074239_32	eggNOG-mapper	1415774.U728_863	NA	NA
UHGV-0074239_32	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0074239_33	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074239_33	UniRef90	UniRef90_UPI001896BB0A	HNH endonuclease	NA
UHGV-0074239_33	eggNOG-mapper	536233.CLO_1807	HNH endonuclease	NA
UHGV-0074239_33	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0074239_33	Structural annotation	PF13392	NA	NA
UHGV-0074239_34	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0074239_34	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0074239_34	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0074239_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0074239_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0074239_36	UniRef90	UniRef90_UPI001159D118	single-stranded DNA-binding protein	NA
UHGV-0074239_36	eggNOG-mapper	457396.CSBG_03291	Single-stranded DNA-binding protein	NA
UHGV-0074239_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0074239_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0074239_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0074239_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0074239_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0074239_37	PHROG	phrog_33582	NA	unknown function
UHGV-0074239_37	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0074239_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0074239_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0074239_38	UniRef90	UniRef90_UPI001159E17E	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0074239_38	eggNOG-mapper	1196322.A370_02048	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0074239_38	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0074239_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0074239_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0074239_38	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0074239_40	eggNOG-mapper	1443125.Z962_p0038	NA	NA
UHGV-0074239_44	PHROG	phrog_1065	NA	unknown function
UHGV-0074239_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0074239_46	UniRef90	UniRef90_UPI0018A8ECDF	transcriptional regulator	NA
UHGV-0074239_46	eggNOG-mapper	1391647.AVSV01000022_gene2550	NA	NA
UHGV-0074239_46	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0074239_46	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0074239_47	UniRef90	UniRef90_UPI0018AB628E	Rha family transcriptional regulator	NA
UHGV-0074239_47	eggNOG-mapper	1415774.U728_742	NA	NA
UHGV-0074239_47	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0074239_47	Structural annotation	PF10543	NA	NA
UHGV-0074239_49	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0074239_49	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074239_49	UniRef90	UniRef90_UPI0017857CC8	HNH endonuclease	NA
UHGV-0074239_49	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-0074239_49	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0074239_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0074239_51	PHROG	phrog_1066	NA	unknown function
UHGV-0074239_51	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA