UHGV-0074298

Genome information

Genome length 36,565 bps

CDS count 46

Completeness 53.74% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074298
vOTU ID	vOTU-022623
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_130917
BioSample	SAMEA2737743
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.23
Jumbo phage	No

Genome content
Genome length	36,565 bps
GC content	32.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	96.04%
Average CDS length	766.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074298_1	KOfam	K02340	holA; DNA polymerase III subunit delta [EC:2.7.7.7]	NA
UHGV-0074298_1	PHROG	phrog_20214	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0074298_1	UniRef90	UniRef90_E7DN83	HolA DNA polymerase III subunit delta	NA
UHGV-0074298_1	eggNOG-mapper	59241.E7DN83_BPDP1	NA	NA
UHGV-0074298_1	Pfam	PF21694	DNA polymerase III delta subunit, C-terminal domain	DNA_pol3_delta_C
UHGV-0074298_1	Structural annotation	PF21694, PF06144, MF_01509, NF005134, COG1466	NA	NA
UHGV-0074298_2	Structural annotation	PF17399	NA	NA
UHGV-0074298_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0074298_4	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0074298_4	UniRef90	UniRef90_A0A0H3UZ66	Putative DNA-cytosine methyltransferase	NA
UHGV-0074298_4	eggNOG-mapper	113355.CM001775_gene2058	Adenine specific DNA methylase Mod	NA
UHGV-0074298_4	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0074298_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0074298_4	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0074298_4	Structural annotation	PF01555, MF_01057, NF008572, COG0863	NA	NA
UHGV-0074298_5	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0074298_5	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0074298_5	UniRef90	UniRef90_UPI0018AA0C72	FAD-dependent thymidylate synthase	NA
UHGV-0074298_5	eggNOG-mapper	1124982.MSI_00390	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0074298_5	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0074298_5	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0074298_5	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0074298_9	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0074298_9	PHROG	phrog_11619	DNA methyltransferase	other
UHGV-0074298_9	UniRef90	UniRef90_A0A3R6I3Y1	Adenine-specific DNA methylase	NA
UHGV-0074298_9	eggNOG-mapper	861450.HMPREF0080_01302	trisaccharide binding	NA
UHGV-0074298_9	COG	COG0742	16S rRNA G966 N2-methylase RsmD	NA
UHGV-0074298_9	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0074298_10	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0074298_10	UniRef90	UniRef90_UPI0016B6DDE2	adenine methyltransferase	NA
UHGV-0074298_10	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0074298_10	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0074298_10	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0074298_10	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0074298_11	PHROG	phrog_1485	NA	unknown function
UHGV-0074298_11	UniRef90	UniRef90_UPI001105E44C	nucleotide modification associated domain-containing protein	NA
UHGV-0074298_11	eggNOG-mapper	1347392.CCEZ01000060_gene3286	NA	NA
UHGV-0074298_11	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0074298_19	PHROG	phrog_9079	NA	unknown function
UHGV-0074298_19	eggNOG-mapper	1391646.AVSU01000053_gene947	NA	NA
UHGV-0074298_20	PHROG	phrog_23746	NA	unknown function
UHGV-0074298_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0074298_21	PHROG	phrog_10250	NA	unknown function
UHGV-0074298_21	UniRef90	UniRef90_UPI001E406D12	PBSX family phage terminase large subunit	NA
UHGV-0074298_21	eggNOG-mapper	59241.E7DNA1_BPDP1	Terminase-like family	NA
UHGV-0074298_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0074298_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0074298_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0074298_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0074298_22	UniRef90	UniRef90_UPI001E369C6C	phage portal protein	NA
UHGV-0074298_22	eggNOG-mapper	59241.E7DNA2_BPDP1	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0074298_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0074298_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0074298_24	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0074298_24	UniRef90	UniRef90_UPI001E457CFA	phage head morphogenesis protein	NA
UHGV-0074298_24	eggNOG-mapper	59241.E7DNA4_BPDP1	Phage Mu protein F like protein	NA
UHGV-0074298_24	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0074298_26	PHROG	phrog_1233	NA	unknown function
UHGV-0074298_26	UniRef90	UniRef90_T3DL44	Phage domain protein	NA
UHGV-0074298_26	eggNOG-mapper	1151292.QEW_0697	NA	NA
UHGV-0074298_26	Structural annotation	PF13058	NA	NA
UHGV-0074298_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0074298_27	UniRef90	UniRef90_UPI001E38E233	phage scaffolding protein	NA
UHGV-0074298_27	eggNOG-mapper	883156.HMPREF9282_00949	Phage minor structural protein GP20	NA
UHGV-0074298_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0074298_27	Structural annotation	PF06810	NA	NA
UHGV-0074298_28	PHROG	phrog_909	major head protein	head and packaging
UHGV-0074298_28	Structural annotation	PF02924	NA	NA
UHGV-0074298_29	PHROG	phrog_29	major head protein	head and packaging
UHGV-0074298_29	UniRef90	UniRef90_UPI001D166481	major capsid protein	NA
UHGV-0074298_29	eggNOG-mapper	59241.E7DNA7_BPDP1	Phage major capsid protein E	NA
UHGV-0074298_29	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0074298_29	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0074298_30	PHROG	phrog_4020	NA	unknown function
UHGV-0074298_30	eggNOG-mapper	1415774.U728_826	NA	NA
UHGV-0074298_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0074298_32	eggNOG-mapper	697281.Mahau_0578	Phage virion morphogenesis	NA
UHGV-0074298_32	COG	COG5005	NA	NA
UHGV-0074298_32	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0074298_33	Structural annotation	PF05657	NA	NA
UHGV-0074298_34	PHROG	phrog_6686	tail tube protein	tail
UHGV-0074298_34	UniRef90	UniRef90_E7DNB3	Structural protein	NA
UHGV-0074298_34	eggNOG-mapper	59241.E7DNB3_BPDP1	NA	NA
UHGV-0074298_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0074298_35	PHROG	phrog_6280	NA	unknown function
UHGV-0074298_35	UniRef90	UniRef90_W6NHB1	Conserved protein	NA
UHGV-0074298_35	eggNOG-mapper	1121342.AUCO01000012_gene1687	NA	NA
UHGV-0074298_36	PHROG	phrog_6541	NA	unknown function
UHGV-0074298_37	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0074298_37	UniRef90	UniRef90_UPI001E29D389	phage tail tape measure protein	NA
UHGV-0074298_37	eggNOG-mapper	1235794.C811_01380	Phage-related minor tail protein	NA
UHGV-0074298_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0074298_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0074298_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0074298_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0074298_38	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0074298_38	UniRef90	UniRef90_A0A1I3MEI4	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0074298_38	eggNOG-mapper	1151292.QEW_2944	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0074298_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0074298_38	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0074298_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0074298_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0074298_38	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-0074298_39	PHROG	phrog_6253	minor tail protein	tail
UHGV-0074298_39	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-0074298_39	eggNOG-mapper	1329516.JPST01000005_gene1273	Prophage endopeptidase tail	NA
UHGV-0074298_39	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0074298_39	COG	COG4926	Phage-related protein	NA
UHGV-0074298_39	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA
UHGV-0074298_40	PHROG	phrog_16267	NA	unknown function
UHGV-0074298_40	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0074298_40	COG	COG4926	Phage-related protein	NA
UHGV-0074298_41	KOfam	K16559	exoK; endo-1,3-1,4-beta-glycanase ExoK [EC:3.2.1.-]	NA
UHGV-0074298_41	eggNOG-mapper	349741.Amuc_0875	Glycosyl hydrolases family 16	NA
UHGV-0074298_41	Pfam	PF00722	Glycosyl hydrolases family 16	Glyco_hydro_16
UHGV-0074298_41	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0074298_41	Structural annotation	PF03935, PF19077, PF18998, PF15432, NF041449, NF033814, NF033675, COG2273, COG2372	NA	NA
UHGV-0074298_42	PHROG	phrog_25601	NA	unknown function
UHGV-0074298_42	eggNOG-mapper	1329516.JPST01000017_gene416	NA	NA
UHGV-0074298_42	COG	COG4926	Phage-related protein	NA
UHGV-0074298_42	Structural annotation	PF13157, PF13229, NF033679	NA	NA
UHGV-0074298_45	UniRef90	UniRef90_UPI000707449F	phage holin	NA
UHGV-0074298_45	eggNOG-mapper	97138.C820_02010	Bacteriophage holin	NA
UHGV-0074298_45	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0074298_45	COG	COG5546	NA	NA