UHGV-0074342

Genome information

Genome length 28,498 bps

CDS count 46

Completeness 80.77% (medium-quality)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074342
vOTU ID	vOTU-015720
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_125653
BioSample	SAMEA2737829
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.2
Jumbo phage	No

Genome content
Genome length	28,498 bps
GC content	28.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	88.70%
Average CDS length	552.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074342_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0074342_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0074342_1	UniRef90	UniRef90_A0A0C3MB59	XRE family transcriptional regulator	NA
UHGV-0074342_1	eggNOG-mapper	1345695.CLSA_c30310	Helix-turn-helix XRE-family like proteins	NA
UHGV-0074342_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074342_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074342_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0074342_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0074342_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0074342_2	UniRef90	UniRef90_A0A1C6KN99	Transcriptional regulator, y4mF family	NA
UHGV-0074342_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0074342_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074342_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074342_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0074342_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0074342_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0074342_4	UniRef90	UniRef90_A0A1C6K8K7	Predicted transcriptional regulator	NA
UHGV-0074342_4	eggNOG-mapper	536232.CLM_1616	Helix-turn-helix XRE-family like proteins	NA
UHGV-0074342_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074342_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0074342_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0074342_5	UniRef90	UniRef90_A0A1C6K8U4	Helix-turn-helix	NA
UHGV-0074342_5	eggNOG-mapper	536232.CLM_1618	sequence-specific DNA binding	NA
UHGV-0074342_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074342_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074342_6	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0074342_6	UniRef90	UniRef90_UPI0018AB50F8	ORF6C domain-containing protein	NA
UHGV-0074342_6	eggNOG-mapper	318464.IO99_00440	ORF6N domain	NA
UHGV-0074342_6	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0074342_6	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0074342_6	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0074342_6	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0074342_7	UniRef90	UniRef90_A0A174D8K3	Spo0E like sporulation regulatory protein	NA
UHGV-0074342_7	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0074342_8	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0074342_8	UniRef90	UniRef90_R6GKC9	Replication initiation protein	NA
UHGV-0074342_8	eggNOG-mapper	1414720.CBYM010000040_gene1625	DnaD domain protein	NA
UHGV-0074342_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0074342_8	Structural annotation	PF07261, PF09681, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-0074342_9	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0074342_9	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0074342_9	UniRef90	UniRef90_UPI001A9BD14A	ATP-binding protein	NA
UHGV-0074342_9	eggNOG-mapper	1391647.AVSV01000022_gene2532	PFAM IstB-like ATP binding protein	NA
UHGV-0074342_9	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0074342_9	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0074342_9	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0074342_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0074342_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0074342_11	UniRef90	UniRef90_UPI0018AC5EC3	single-stranded DNA-binding protein	NA
UHGV-0074342_11	eggNOG-mapper	1414720.CBYM010000001_gene680	Single-stranded DNA-binding protein	NA
UHGV-0074342_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0074342_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0074342_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0074342_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0074342_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0074342_12	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074342_12	UniRef90	UniRef90_A0A410PPK7	HTH myb-type domain-containing protein	NA
UHGV-0074342_12	eggNOG-mapper	1196322.A370_05734	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0074342_12	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0074342_12	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-0074342_12	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0074342_12	Structural annotation	PF01710, NF040595, COG5147	NA	NA
UHGV-0074342_13	Structural annotation	PF11148, MF_01553, COG5503	NA	NA
UHGV-0074342_16	PHROG	phrog_98	NA	unknown function
UHGV-0074342_16	UniRef90	UniRef90_UPI001C8DE272	YopX family protein	NA
UHGV-0074342_16	eggNOG-mapper	552525.B5LPP1_9CAUD	YopX protein	NA
UHGV-0074342_16	Pfam	PF09643	YopX protein	YopX
UHGV-0074342_16	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0074342_18	PHROG	phrog_29188	NA	unknown function
UHGV-0074342_24	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0074342_24	UniRef90	UniRef90_UPI0018AC4BDF	nitroreductase	NA
UHGV-0074342_24	eggNOG-mapper	1443122.Z958_05945	NA	NA
UHGV-0074342_24	Structural annotation	PF08281, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0074342_25	PHROG	phrog_3928	NA	unknown function
UHGV-0074342_25	eggNOG-mapper	1414720.CBYM010000040_gene1639	NA	NA
UHGV-0074342_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0074342_26	PHROG	phrog_216	integrase	integration and excision
UHGV-0074342_26	UniRef90	UniRef90_UPI0018992E1A	tyrosine-type recombinase/integrase	NA
UHGV-0074342_26	eggNOG-mapper	1280689.AUJC01000011_gene1512	Integrase	NA
UHGV-0074342_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0074342_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0074342_26	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0074342_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0074342_27	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0074342_27	UniRef90	UniRef90_UPI0018A90D59	HNH endonuclease	NA
UHGV-0074342_27	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0074342_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0074342_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0074342_27	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0074342_28	PHROG	phrog_1066	NA	unknown function
UHGV-0074342_28	eggNOG-mapper	573061.Clocel_2441	NA	NA
UHGV-0074342_28	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0074342_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0074342_29	UniRef90	UniRef90_UPI0018977AE9	terminase large subunit	NA
UHGV-0074342_29	eggNOG-mapper	290402.Cbei_0906	Terminase	NA
UHGV-0074342_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0074342_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0074342_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0074342_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0074342_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0074342_30	UniRef90	UniRef90_UPI00189B2CE6	phage portal protein	NA
UHGV-0074342_30	eggNOG-mapper	1414720.CBYM010000040_gene1645	Portal protein	NA
UHGV-0074342_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0074342_30	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0074342_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0074342_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0074342_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0074342_31	UniRef90	UniRef90_UPI001896FC99	Clp protease ClpP	NA
UHGV-0074342_31	eggNOG-mapper	500633.CLOHIR_00366	Belongs to the peptidase S14 family	NA
UHGV-0074342_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0074342_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0074342_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0074342_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0074342_32	UniRef90	UniRef90_UPI00189B715B	phage major capsid protein	NA
UHGV-0074342_32	eggNOG-mapper	1382358.JHVN01000024_gene1707	Phage capsid family	NA
UHGV-0074342_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0074342_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0074342_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0074342_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0074342_33	PHROG	phrog_5223	neck protein	connector
UHGV-0074342_33	UniRef90	UniRef90_UPI001899F211	head-tail connector protein	NA
UHGV-0074342_33	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0074342_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0074342_33	Structural annotation	TIGR01560	NA	NA
UHGV-0074342_34	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0074342_34	UniRef90	UniRef90_A0A133N6L3	Putative phage head-tail adaptor	NA
UHGV-0074342_34	eggNOG-mapper	931626.Awo_c35070	NA	NA
UHGV-0074342_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0074342_35	UniRef90	UniRef90_A0A133N6J9	Phage protein, HK97 gp10 family	NA
UHGV-0074342_35	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0074342_35	Structural annotation	TIGR01725	NA	NA
UHGV-0074342_36	PHROG	phrog_957	head protein	head and packaging
UHGV-0074342_36	UniRef90	UniRef90_UPI0004B43D30	NA	NA
UHGV-0074342_36	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-0074342_36	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0074342_37	PHROG	phrog_885	major tail protein	tail
UHGV-0074342_37	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0074342_37	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0074342_38	eggNOG-mapper	1414720.CBYM010000040_gene1653	NA	NA
UHGV-0074342_39	eggNOG-mapper	1414720.CBYM010000040_gene1654	NA	NA
UHGV-0074342_40	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0074342_40	UniRef90	UniRef90_B1BPR4	Putative phage protein	NA
UHGV-0074342_40	eggNOG-mapper	1414720.CBYM010000040_gene1655	tail tape measure protein	NA
UHGV-0074342_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0074342_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0074342_40	COG	COG5283	Phage-related tail protein	NA
UHGV-0074342_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0074342_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0074342_41	UniRef90	UniRef90_UPI0004ACC375	phage tail family protein	NA
UHGV-0074342_41	eggNOG-mapper	1414720.CBYM010000040_gene1656	PFAM Phage tail protein	NA
UHGV-0074342_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0074342_41	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0074342_42	PHROG	phrog_3558	tail protein	tail
UHGV-0074342_42	UniRef90	UniRef90_UPI0004BA5C05	phage tail protein	NA
UHGV-0074342_42	eggNOG-mapper	1414720.CBYM010000001_gene709	Phage minor structural protein, N-terminal	NA
UHGV-0074342_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0074342_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0074342_42	COG	COG4926	Phage-related protein	NA
UHGV-0074342_42	Structural annotation	PF06605, PF09931, TIGR01665, COG4926	NA	NA
UHGV-0074342_43	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0074342_43	UniRef90	UniRef90_UPI001056B5FA	SGNH/GDSL hydrolase family protein	NA
UHGV-0074342_43	eggNOG-mapper	86416.Clopa_2555	lipolytic protein G-D-S-L family	NA
UHGV-0074342_43	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0074342_43	Structural annotation	PF16255, NF007819, COG2845	NA	NA
UHGV-0074342_44	PHROG	phrog_199	holin	lysis
UHGV-0074342_44	UniRef90	UniRef90_UPI000509F802	phage holin family protein	NA
UHGV-0074342_44	eggNOG-mapper	1499684.CCNP01000023_gene3170	Bacteriophage holin family	NA
UHGV-0074342_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0074342_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0074342_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0074342_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0074342_45	PHROG	phrog_435	endolysin	lysis
UHGV-0074342_45	UniRef90	UniRef90_UPI00140FE253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074342_45	eggNOG-mapper	1414720.CBYM010000002_gene552	Ami_3	NA
UHGV-0074342_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0074342_45	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0074342_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074342_45	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0074342_46	eggNOG-mapper	1414720.CBYM010000002_gene460	DHHW protein	NA
UHGV-0074342_46	Pfam	PF14286	DHHW protein	DHHW