UHGV-0074372

Genome information

Genome length 22,952 bps

CDS count 37

Completeness 57.27% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074372
vOTU ID	vOTU-036293
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_128831
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.88
Jumbo phage	No

Genome content
Genome length	22,952 bps
GC content	54.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.61%
Average CDS length	576.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074372_1	eggNOG-mapper	1226322.HMPREF1545_03794	NA	NA
UHGV-0074372_2	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0074372_2	PHROG	phrog_938	endolysin	lysis
UHGV-0074372_2	UniRef90	UniRef90_R9M243	Hydrolase_2 domain-containing protein	NA
UHGV-0074372_2	eggNOG-mapper	1235797.C816_02623	Cell Wall Hydrolase	NA
UHGV-0074372_2	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0074372_2	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0074372_3	UniRef90	UniRef90_A0A1Q6RES0	TIGR03905 family protein	NA
UHGV-0074372_3	eggNOG-mapper	1226322.HMPREF1545_03800	TSCPD domain	NA
UHGV-0074372_3	Pfam	PF12637	TSCPD domain	TSCPD
UHGV-0074372_3	NCBIFam	TIGR03905.1	TIGR03905 family TSCPD domain-containing protein	NA
UHGV-0074372_3	Structural annotation	PF12637, TIGR03905	NA	NA
UHGV-0074372_4	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0074372_5	Structural annotation	PF12510	NA	NA
UHGV-0074372_6	PHROG	phrog_20016	NA	unknown function
UHGV-0074372_6	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0074372_6	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0074372_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0074372_7	PHROG	phrog_16490	NA	unknown function
UHGV-0074372_7	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0074372_8	PHROG	phrog_22984	NA	unknown function
UHGV-0074372_9	PHROG	phrog_21718	NA	unknown function
UHGV-0074372_9	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0074372_10	PHROG	phrog_3754	NA	unknown function
UHGV-0074372_10	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0074372_12	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0074372_12	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0074372_13	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0074372_13	PHROG	phrog_894	endolysin	lysis
UHGV-0074372_13	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0074372_13	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0074372_13	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0074372_13	COG	COG3108	NA	NA
UHGV-0074372_13	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0074372_14	PHROG	phrog_18955	NA	unknown function
UHGV-0074372_14	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0074372_14	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0074372_14	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0074372_14	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0074372_16	PHROG	phrog_13256	NA	unknown function
UHGV-0074372_16	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0074372_17	PHROG	phrog_4105	NA	unknown function
UHGV-0074372_17	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0074372_18	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0074372_18	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0074372_18	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0074372_18	Structural annotation	PF18463	NA	NA
UHGV-0074372_19	PHROG	phrog_32744	NA	unknown function
UHGV-0074372_19	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0074372_19	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0074372_20	PHROG	phrog_1194	NA	unknown function
UHGV-0074372_20	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0074372_21	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0074372_21	UniRef90	UniRef90_R5YSS7	Phage-related protein	NA
UHGV-0074372_21	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0074372_21	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0074372_21	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0074372_23	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0074372_24	PHROG	phrog_885	major tail protein	tail
UHGV-0074372_24	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0074372_24	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0074372_24	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0074372_25	Structural annotation	PF11367	NA	NA
UHGV-0074372_26	PHROG	phrog_17977	NA	unknown function
UHGV-0074372_26	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0074372_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0074372_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-0074372_28	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0074372_28	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0074372_28	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0074372_28	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0074372_29	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0074372_29	Structural annotation	PF06810	NA	NA
UHGV-0074372_30	Pfam	PF08681	NA	DUF1778
UHGV-0074372_32	Structural annotation	PF18152	NA	NA
UHGV-0074372_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0074372_33	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0074372_33	eggNOG-mapper	764299.STRIC_1434	NA	NA
UHGV-0074372_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0074372_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0074372_35	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0074372_35	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0074372_35	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-0074372_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0074372_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0074372_35	COG	COG2369	NA	NA
UHGV-0074372_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0074372_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0074372_36	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0074372_36	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0074372_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0074372_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0074372_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0074372_37	PHROG	phrog_10250	NA	unknown function
UHGV-0074372_37	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0074372_37	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0074372_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0074372_37	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0074372_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0074372_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0074372_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA