UHGV-0074426

Genome information

Genome length 35,284 bps

CDS count 59

Completeness 94.03% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074426
vOTU ID	vOTU-014701
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_116523
BioSample	SAMEA2580192
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.03
Jumbo phage	No

Genome content
Genome length	35,284 bps
GC content	44.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.25%
Average CDS length	545.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074426_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0074426_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0074426_1	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-0074426_1	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-0074426_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0074426_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0074426_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0074426_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0074426_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0074426_2	PHROG	phrog_2742	endolysin	lysis
UHGV-0074426_2	UniRef90	UniRef90_A0A1C5W4I4	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074426_2	eggNOG-mapper	97139.C824_00247	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074426_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0074426_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074426_2	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0074426_3	PHROG	phrog_37799	NA	unknown function
UHGV-0074426_3	UniRef90	UniRef90_A0A3E5GSW8	Protein utxA	NA
UHGV-0074426_3	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0074426_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0074426_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0074426_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0074426_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0074426_6	Structural annotation	PF06184, MF_01372, TIGR03511	NA	NA
UHGV-0074426_10	PHROG	phrog_16164	NA	unknown function
UHGV-0074426_11	PHROG	phrog_1382	NA	unknown function
UHGV-0074426_11	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-0074426_11	Structural annotation	NF040910	NA	NA
UHGV-0074426_12	PHROG	phrog_12931	NA	unknown function
UHGV-0074426_12	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0074426_13	PHROG	phrog_25635	NA	unknown function
UHGV-0074426_13	eggNOG-mapper	411462.DORLON_00774	NA	NA
UHGV-0074426_14	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0074426_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0074426_14	UniRef90	UniRef90_A0A1C5SV17	Tyrosine recombinase XerD	NA
UHGV-0074426_14	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0074426_14	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0074426_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0074426_14	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0074426_14	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0074426_15	PHROG	phrog_25635	NA	unknown function
UHGV-0074426_15	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0074426_15	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-0074426_15	Structural annotation	PF20747	NA	NA
UHGV-0074426_16	PHROG	phrog_538	minor tail protein	tail
UHGV-0074426_16	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0074426_16	eggNOG-mapper	742765.HMPREF9457_03374	NA	NA
UHGV-0074426_16	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0074426_16	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0074426_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0074426_17	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0074426_17	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0074426_17	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0074426_18	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0074426_18	UniRef90	UniRef90_A0A174JJE7	Phage-related protein	NA
UHGV-0074426_18	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0074426_18	COG	COG1511	NA	NA
UHGV-0074426_18	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0074426_19	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0074426_19	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0074426_20	PHROG	phrog_706	NA	unknown function
UHGV-0074426_20	UniRef90	UniRef90_UPI00156F6A1F	Gp15 family bacteriophage protein	NA
UHGV-0074426_20	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0074426_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0074426_20	Structural annotation	PF06854	NA	NA
UHGV-0074426_21	PHROG	phrog_4450	NA	unknown function
UHGV-0074426_21	eggNOG-mapper	411462.DORLON_00780	NA	NA
UHGV-0074426_21	Pfam	PF20378	NA	DUF6673
UHGV-0074426_21	Structural annotation	PF20378	NA	NA
UHGV-0074426_22	PHROG	phrog_3099	NA	unknown function
UHGV-0074426_22	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0074426_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0074426_23	PHROG	phrog_3266	tail completion	connector
UHGV-0074426_23	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0074426_23	Structural annotation	PF12691	NA	NA
UHGV-0074426_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0074426_24	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0074426_24	eggNOG-mapper	411461.DORFOR_00741	NA	NA
UHGV-0074426_24	Structural annotation	PF11114	NA	NA
UHGV-0074426_25	PHROG	phrog_3366	NA	unknown function
UHGV-0074426_25	eggNOG-mapper	742765.HMPREF9457_02129	NA	NA
UHGV-0074426_25	Pfam	PF20536	NA	DUF6751
UHGV-0074426_25	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0074426_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0074426_26	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0074426_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0074426_27	UniRef90	UniRef90_UPI001D0DF121	phage major capsid protein	NA
UHGV-0074426_27	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0074426_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0074426_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0074426_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0074426_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0074426_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0074426_28	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0074426_28	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0074426_29	KOfam	K07584	NA	NA
UHGV-0074426_29	PHROG	phrog_4478	peptidase	other
UHGV-0074426_29	UniRef90	UniRef90_A0A396L8V6	Ribosomal-processing cysteine protease Prp	NA
UHGV-0074426_29	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0074426_29	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0074426_29	COG	COG2868	NA	NA
UHGV-0074426_29	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0074426_30	PHROG	phrog_12728	NA	unknown function
UHGV-0074426_30	UniRef90	UniRef90_A0A6H0X686	Putative signal peptide-containing lipoprotein	NA
UHGV-0074426_30	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-0074426_31	PHROG	phrog_35328	NA	unknown function
UHGV-0074426_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0074426_32	UniRef90	UniRef90_A0A1C5UIX2	Phage minor capsid protein 2	NA
UHGV-0074426_32	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-0074426_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0074426_32	COG	COG2369	NA	NA
UHGV-0074426_32	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0074426_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0074426_33	UniRef90	UniRef90_A0A396KWF4	Phage portal protein	NA
UHGV-0074426_33	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0074426_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0074426_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0074426_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0074426_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0074426_34	UniRef90	UniRef90_A0A391P5T3	Terminase	NA
UHGV-0074426_34	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0074426_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0074426_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0074426_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0074426_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0074426_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0074426_35	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0074426_35	UniRef90	UniRef90_A0A391P905	DNA-binding protein	NA
UHGV-0074426_35	eggNOG-mapper	411461.DORFOR_00751	DNA packaging	NA
UHGV-0074426_35	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0074426_35	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0074426_35	COG	COG5484	NA	NA
UHGV-0074426_35	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0074426_36	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0074426_36	UniRef90	UniRef90_A0A3E3I6G1	NA	NA
UHGV-0074426_36	eggNOG-mapper	585501.HMPREF6123_0812	NA	NA
UHGV-0074426_36	Pfam	PF10097	NA	DUF2335
UHGV-0074426_36	COG	COG5346	NA	NA
UHGV-0074426_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0074426_38	UniRef90	UniRef90_A0A412MDT8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0074426_38	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-0074426_38	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0074426_38	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0074426_41	PHROG	phrog_15198	NA	unknown function
UHGV-0074426_41	UniRef90	UniRef90_UPI001EE0C335	NA	NA
UHGV-0074426_41	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0074426_41	Pfam	PF04448	NA	DUF551
UHGV-0074426_42	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0074426_43	PHROG	phrog_17690	NA	unknown function
UHGV-0074426_43	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0074426_43	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0074426_44	PHROG	phrog_3253	NA	unknown function
UHGV-0074426_44	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-0074426_44	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-0074426_45	PHROG	phrog_23374	NA	unknown function
UHGV-0074426_46	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0074426_46	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0074426_46	UniRef90	UniRef90_U2RAH9	SF4 helicase domain-containing protein	NA
UHGV-0074426_46	eggNOG-mapper	1256908.HMPREF0373_00663	NA	NA
UHGV-0074426_46	Pfam	PF13481	AAA domain	AAA_25
UHGV-0074426_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-0074426_46	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0074426_48	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0074426_48	UniRef90	UniRef90_A0A844E611	NA	NA
UHGV-0074426_48	eggNOG-mapper	1256908.HMPREF0373_00661	NA	NA
UHGV-0074426_48	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0074426_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0074426_49	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0074426_49	UniRef90	UniRef90_A0A391NZM9	ERCC4 domain-containing protein	NA
UHGV-0074426_49	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0074426_49	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0074426_49	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0074426_50	PHROG	phrog_18107	NA	unknown function
UHGV-0074426_50	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0074426_50	Structural annotation	PF05037	NA	NA
UHGV-0074426_51	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0074426_51	UniRef90	UniRef90_UPI001D06DB67	ATP-binding protein	NA
UHGV-0074426_51	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0074426_51	Pfam	PF13479	AAA domain	AAA_24
UHGV-0074426_51	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0074426_52	Structural annotation	PF14902	NA	NA
UHGV-0074426_53	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0074426_53	UniRef90	UniRef90_A0A564SBZ1	Siphovirus Gp157	NA
UHGV-0074426_53	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0074426_53	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0074426_53	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0074426_54	PHROG	phrog_3777	NA	unknown function
UHGV-0074426_54	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0074426_54	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0074426_54	Pfam	PF12957	NA	DUF3846
UHGV-0074426_56	UniRef90	UniRef90_UPI000B82F4E5	polyprenyl synthetase solanesyl diphosphate synthase	NA
UHGV-0074426_56	eggNOG-mapper	1304866.K413DRAFT_3062	NA	NA
UHGV-0074426_56	Structural annotation	PF20063, TIGR01764	NA	NA
UHGV-0074426_59	UniRef90	UniRef90_A0A1C5ULX1	HTH cro/C1-type domain-containing protein	NA
UHGV-0074426_59	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA