UHGV-0074506

Genome information

Genome length 32,705 bps

CDS count 41

Completeness 67.46% (medium-quality)

geNomad score 0.9487

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074506
vOTU ID	vOTU-041545
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_130922
BioSample	SAMEA2737743
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9487
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.18
Jumbo phage	No

Genome content
Genome length	32,705 bps
GC content	35.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.86%
Average CDS length	733.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074506_1	UniRef90	UniRef90_A0A7W8HDB0	Diketogulonate reductase-like aldo/keto reductase	NA
UHGV-0074506_1	eggNOG-mapper	1504823.CCMM01000012_gene1761	Aldo/keto reductase family	NA
UHGV-0074506_1	COG	COG0656	Aldo/keto reductase, related to diketogulonate reductase	NA
UHGV-0074506_2	UniRef90	UniRef90_UPI001D0AEAB5	flavodoxin family protein	NA
UHGV-0074506_2	eggNOG-mapper	478749.BRYFOR_09879	PFAM NADPH-dependent FMN reductase	NA
UHGV-0074506_2	COG	COG0655	Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase	NA
UHGV-0074506_3	KOfam	K06221	dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]	NA
UHGV-0074506_3	PHROG	phrog_8735	NA	unknown function
UHGV-0074506_3	UniRef90	UniRef90_A0A0J8YYZ0	Organophosphate reductase	NA
UHGV-0074506_3	eggNOG-mapper	1504823.CCMM01000012_gene1762	Aldo/keto reductase family	NA
UHGV-0074506_3	Pfam	PF00248	Aldo/keto reductase family	Aldo_ket_red
UHGV-0074506_3	COG	COG0656	Aldo/keto reductase, related to diketogulonate reductase	NA
UHGV-0074506_4	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0074506_4	UniRef90	UniRef90_A0A354HKS8	Terminase	NA
UHGV-0074506_4	eggNOG-mapper	411490.ANACAC_00748	NA	NA
UHGV-0074506_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0074506_5	eggNOG-mapper	411468.CLOSCI_00218	NA	NA
UHGV-0074506_5	AcrCatalog	cluster_9768	NA	NA
UHGV-0074506_6	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0074506_6	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0074506_6	UniRef90	UniRef90_A0A354HKS9	DNA modification methylase	NA
UHGV-0074506_6	eggNOG-mapper	641112.ACOK01000108_gene1785	NA	NA
UHGV-0074506_6	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0074506_6	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0074506_6	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0074506_6	COG	COG0863	DNA modification methylase	NA
UHGV-0074506_6	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0074506_7	PHROG	phrog_3782	NA	unknown function
UHGV-0074506_7	UniRef90	UniRef90_A0A348ZBT6	NA	NA
UHGV-0074506_7	eggNOG-mapper	573061.Clocel_3983	NA	NA
UHGV-0074506_7	Pfam	PF14192	NA	DUF4314
UHGV-0074506_7	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0074506_8	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0074506_8	UniRef90	UniRef90_A0A348ZBT7	Alpha-L-fucosidase	NA
UHGV-0074506_8	eggNOG-mapper	573061.Clocel_3982	amidoligase enzyme	NA
UHGV-0074506_8	AcrCatalog	cluster_58247	NA	NA
UHGV-0074506_8	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0074506_8	Structural annotation	PF12224	NA	NA
UHGV-0074506_9	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0074506_9	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0074506_9	UniRef90	UniRef90_A0A348ZBT8	Gamma-glutamylcyclotransferase	NA
UHGV-0074506_9	eggNOG-mapper	665956.HMPREF1032_02272	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0074506_9	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0074506_9	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0074506_9	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0074506_10	PHROG	phrog_2945	NA	unknown function
UHGV-0074506_10	UniRef90	UniRef90_W7US45	Hydrogenase maturation protein HypF	NA
UHGV-0074506_10	eggNOG-mapper	1235799.C818_01022	NA	NA
UHGV-0074506_11	eggNOG-mapper	411489.CLOL250_01312	NA	NA
UHGV-0074506_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0074506_12	UniRef90	UniRef90_A0A348ZBU0	Terminase	NA
UHGV-0074506_12	eggNOG-mapper	1121334.KB911068_gene2288	large subunit	NA
UHGV-0074506_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0074506_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0074506_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0074506_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0074506_14	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-0074506_14	PHROG	phrog_2455	NA	unknown function
UHGV-0074506_14	UniRef90	UniRef90_A0A348ZBU2	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0074506_14	eggNOG-mapper	908340.HMPREF9406_0164	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0074506_14	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0074506_14	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0074506_14	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0074506_14	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-0074506_15	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0074506_15	PHROG	phrog_2737	NA	unknown function
UHGV-0074506_15	UniRef90	UniRef90_A0A348ZBU3	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA
UHGV-0074506_15	eggNOG-mapper	411468.CLOSCI_03384	RelB antitoxin	NA
UHGV-0074506_15	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0074506_15	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0074506_15	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0074506_15	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0074506_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0074506_16	UniRef90	UniRef90_A0A354HKT8	Phage portal protein	NA
UHGV-0074506_16	eggNOG-mapper	1235802.C823_05278	Phage portal protein	NA
UHGV-0074506_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0074506_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0074506_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0074506_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0074506_17	eggNOG-mapper	869209.Tresu_0674	NA	NA
UHGV-0074506_17	Structural annotation	PF02384, MF_01872, TIGR02987, COG0286	NA	NA
UHGV-0074506_18	PHROG	phrog_78	tail terminator	connector
UHGV-0074506_18	eggNOG-mapper	1216932.CM240_0622	High confidence in function and specificity	NA
UHGV-0074506_19	PHROG	phrog_88	major tail protein	tail
UHGV-0074506_19	UniRef90	UniRef90_A0A348ZBV1	Phage tail protein	NA
UHGV-0074506_19	eggNOG-mapper	1216932.CM240_0623	phage major tail protein, phi13 family	NA
UHGV-0074506_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0074506_19	COG	COG5492	NA	NA
UHGV-0074506_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0074506_20	PHROG	phrog_2115	tail protein	tail
UHGV-0074506_20	eggNOG-mapper	1216932.CM240_0624	NA	NA
UHGV-0074506_20	Structural annotation	PF11836	NA	NA
UHGV-0074506_21	PHROG	phrog_10988	NA	unknown function
UHGV-0074506_21	eggNOG-mapper	573061.Clocel_3968	NA	NA
UHGV-0074506_22	eggNOG-mapper	1208321.D104_18110	NA	NA
UHGV-0074506_23	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0074506_23	eggNOG-mapper	333138.LQ50_04250	Phage tail tape measure protein	NA
UHGV-0074506_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0074506_23	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0074506_24	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0074506_25	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0074506_25	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0074506_25	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0074506_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0074506_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0074506_25	COG	COG4926	Phage-related protein	NA
UHGV-0074506_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0074506_28	PHROG	phrog_21233	NA	unknown function
UHGV-0074506_28	UniRef90	UniRef90_A0A348ZBW0	Holin	NA
UHGV-0074506_28	eggNOG-mapper	908340.HMPREF9406_0179	toxin secretion phage lysis holin	NA
UHGV-0074506_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0074506_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0074506_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0074506_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0074506_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0074506_29	PHROG	phrog_20388	endolysin	lysis
UHGV-0074506_29	UniRef90	UniRef90_A0A348ZBW1	Cpl-7 domain-containing protein	NA
UHGV-0074506_29	eggNOG-mapper	411490.ANACAC_00721	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0074506_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0074506_29	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0074506_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0074506_29	Structural annotation	PF08230, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0074506_30	PHROG	phrog_7234	NA	unknown function
UHGV-0074506_30	eggNOG-mapper	1230342.CTM_16852	NA	NA
UHGV-0074506_31	PHROG	phrog_408	NA	unknown function
UHGV-0074506_31	UniRef90	UniRef90_R5WJD8	rRNA biogenesis protein rrp5 putative	NA
UHGV-0074506_31	eggNOG-mapper	698758.AXY_13970	NA	NA
UHGV-0074506_32	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074506_32	UniRef90	UniRef90_A0A2T0GF39	NA	NA
UHGV-0074506_32	eggNOG-mapper	1035184.HMPREF1042_1370	NA	NA
UHGV-0074506_32	Pfam	PF10926	NA	DUF2800
UHGV-0074506_32	COG	COG2887	RecB family exonuclease	NA
UHGV-0074506_32	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0074506_33	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0074506_33	UniRef90	UniRef90_R5VQ47	Phage-related protein	NA
UHGV-0074506_33	eggNOG-mapper	1118055.CAGU01000013_gene802	NA	NA
UHGV-0074506_33	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0074506_33	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0074506_34	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0074506_34	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0074506_34	UniRef90	UniRef90_R5VPA7	POLAc domain-containing protein	NA
UHGV-0074506_34	eggNOG-mapper	1118055.CAGU01000013_gene800	DNA-directed DNA polymerase	NA
UHGV-0074506_34	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0074506_34	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0074506_34	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0074506_35	PHROG	phrog_2996	NA	unknown function
UHGV-0074506_35	eggNOG-mapper	1487921.DP68_11400	NA	NA
UHGV-0074506_35	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-0074506_35	Structural annotation	PF20612	NA	NA
UHGV-0074506_36	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0074506_36	PHROG	phrog_95	integrase	integration and excision
UHGV-0074506_36	UniRef90	UniRef90_A0A1M5R994	Site-specific DNA recombinase	NA
UHGV-0074506_36	eggNOG-mapper	1216932.CM240_0633	resolvase	NA
UHGV-0074506_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0074506_36	Pfam	PF07508	Recombinase	Recombinase
UHGV-0074506_36	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0074506_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0074506_36	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0074506_37	PHROG	phrog_7701	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0074506_37	UniRef90	UniRef90_A0A3E3E6A9	Recombinase domain-containing protein	NA
UHGV-0074506_37	eggNOG-mapper	938289.CAJN020000007_gene429	Recombinase	NA
UHGV-0074506_37	Structural annotation	PF07508	NA	NA
UHGV-0074506_38	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0074506_38	PHROG	phrog_95	integrase	integration and excision
UHGV-0074506_38	UniRef90	UniRef90_R5VXP3	Resolvase N-terminal domain protein	NA
UHGV-0074506_38	eggNOG-mapper	1216932.CM240_0635	resolvase	NA
UHGV-0074506_38	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0074506_38	Pfam	PF07508	Recombinase	Recombinase
UHGV-0074506_38	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0074506_38	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0074506_38	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0074506_39	UniRef90	UniRef90_R5XDZ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0074506_39	eggNOG-mapper	471875.RUMLAC_01578	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0074506_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0074506_39	Structural annotation	PF20075, NF041951, COG1396	NA	NA
UHGV-0074506_40	eggNOG-mapper	471875.RUMLAC_01577	NA	NA
UHGV-0074506_41	UniRef90	UniRef90_A0A200I2I6	GIY-YIG domain-containing protein	NA
UHGV-0074506_41	eggNOG-mapper	471875.RUMLAC_01576	regulation of methylation-dependent chromatin silencing	NA
UHGV-0074506_41	COG	COG3680	NA	NA