UHGV-0074538

Genome information

Genome length 45,071 bps

CDS count 70

Completeness 78.92% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074538
vOTU ID	vOTU-025906
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_133310
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.31
Jumbo phage	No

Genome content
Genome length	45,071 bps
GC content	37.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	88.53%
Average CDS length	572.01 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074538_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0074538_1	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0074538_1	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0074538_1	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0074538_1	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0074538_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0074538_1	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0074538_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0074538_1	Structural annotation	PF00145, MF_00812, TIGR00675, COG0270	NA	NA
UHGV-0074538_2	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0074538_2	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0074538_2	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0074538_2	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0074538_2	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0074538_2	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0074538_2	COG	COG0863	DNA modification methylase	NA
UHGV-0074538_2	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0074538_3	Structural annotation	PF17388	NA	NA
UHGV-0074538_5	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0074538_7	PHROG	phrog_19106	NA	unknown function
UHGV-0074538_7	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0074538_7	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0074538_7	Structural annotation	TIGR01453	NA	NA
UHGV-0074538_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0074538_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0074538_8	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0074538_8	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0074538_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0074538_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0074538_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0074538_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0074538_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0074538_10	PHROG	phrog_8684	NA	unknown function
UHGV-0074538_10	UniRef90	UniRef90_UPI000E50DC0C	YopX family protein	NA
UHGV-0074538_10	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0074538_10	Pfam	PF09643	YopX protein	YopX
UHGV-0074538_10	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0074538_10	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0074538_12	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0074538_12	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0074538_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0074538_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0074538_15	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0074538_15	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0074538_15	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0074538_15	dbAPIS	APIS058	NA	NA
UHGV-0074538_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0074538_15	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0074538_16	PHROG	phrog_25456	NA	unknown function
UHGV-0074538_17	PHROG	phrog_32498	NA	unknown function
UHGV-0074538_17	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0074538_18	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0074538_18	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0074538_18	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0074538_18	Pfam	PF03837	RecT family	RecT
UHGV-0074538_18	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0074538_19	PHROG	phrog_4433	NA	unknown function
UHGV-0074538_19	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0074538_19	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0074538_19	Structural annotation	NF007410	NA	NA
UHGV-0074538_21	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0074538_21	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074538_21	UniRef90	UniRef90_R7BHE4	Phage-related protein	NA
UHGV-0074538_21	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0074538_21	Pfam	PF13476	AAA domain	AAA_23
UHGV-0074538_21	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0074538_21	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0074538_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0074538_23	PHROG	phrog_26861	NA	unknown function
UHGV-0074538_23	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0074538_23	eggNOG-mapper	511680.BUTYVIB_01841	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0074538_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0074538_23	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0074538_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0074538_23	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0074538_24	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0074538_24	UniRef90	UniRef90_A0A8D9UIQ5	Sporulation initiation factor	NA
UHGV-0074538_24	eggNOG-mapper	1410617.JHXH01000004_gene1309	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0074538_24	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0074538_24	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0074538_24	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0074538_25	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0074538_25	PHROG	phrog_14642	endolysin	lysis
UHGV-0074538_25	UniRef90	UniRef90_A0A8D9PGU7	Cell Wall Hydrolase	NA
UHGV-0074538_25	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-0074538_25	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0074538_25	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0074538_25	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0074538_26	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0074538_26	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0074538_26	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0074538_26	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0074538_26	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0074538_26	COG	COG3617	Prophage antirepressor	NA
UHGV-0074538_26	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0074538_27	UniRef90	UniRef90_UPI000E4D6E81	helix-turn-helix domain-containing protein	NA
UHGV-0074538_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074538_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074538_27	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0074538_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0074538_28	UniRef90	UniRef90_R6ZMD8	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0074538_28	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0074538_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0074538_28	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0074538_29	Structural annotation	PF03444, MF_00732, NF003025, COG1321	NA	NA
UHGV-0074538_30	KOfam	K07273	acm; lysozyme	NA
UHGV-0074538_30	PHROG	phrog_291	endolysin	lysis
UHGV-0074538_30	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0074538_30	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0074538_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0074538_30	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0074538_30	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0074538_32	PHROG	phrog_2566	NA	unknown function
UHGV-0074538_33	PHROG	phrog_16267	NA	unknown function
UHGV-0074538_33	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0074538_33	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0074538_33	COG	COG4926	Phage-related protein	NA
UHGV-0074538_33	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0074538_34	PHROG	phrog_1401	NA	unknown function
UHGV-0074538_34	Structural annotation	PF07761	NA	NA
UHGV-0074538_36	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0074538_37	UniRef90	UniRef90_A0A8D9UIY0	NA	NA
UHGV-0074538_37	Pfam	PF16729	NA	DUF5067
UHGV-0074538_37	Structural annotation	PF16729, TIGR04087, COG3353	NA	NA
UHGV-0074538_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0074538_38	eggNOG-mapper	483218.BACPEC_01146	domain protein	NA
UHGV-0074538_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0074538_39	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074538_39	UniRef90	UniRef90_UPI000CF201CD	GIY-YIG nuclease family protein	NA
UHGV-0074538_39	eggNOG-mapper	1126950.G9J202_9CAUD	nucleic acid binding	NA
UHGV-0074538_39	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0074538_39	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0074538_39	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0074538_39	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0074538_40	PHROG	phrog_28918	NA	unknown function
UHGV-0074538_40	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0074538_40	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0074538_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0074538_40	Structural annotation	PF20155	NA	NA
UHGV-0074538_41	PHROG	phrog_36112	NA	unknown function
UHGV-0074538_41	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0074538_41	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0074538_43	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0074538_43	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0074538_44	Structural annotation	PF05657	NA	NA
UHGV-0074538_45	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0074538_45	AcrCatalog	cluster_24841	NA	NA
UHGV-0074538_47	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0074538_47	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0074538_48	PHROG	phrog_18218	NA	unknown function
UHGV-0074538_48	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0074538_48	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0074538_48	Structural annotation	PF06946	NA	NA
UHGV-0074538_49	PHROG	phrog_1863	NA	unknown function
UHGV-0074538_49	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0074538_50	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0074538_51	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0074538_51	Structural annotation	PF21169	NA	NA
UHGV-0074538_52	PHROG	phrog_544	major head protein	head and packaging
UHGV-0074538_52	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0074538_52	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0074538_52	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0074538_52	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0074538_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0074538_54	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0074538_54	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0074538_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0074538_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0074538_55	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0074538_56	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0074538_56	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0074538_56	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0074538_56	Pfam	PF07374	NA	DUF1492
UHGV-0074538_56	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0074538_56	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0074538_57	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0074538_57	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0074538_57	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0074538_57	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0074538_57	COG	COG5410	NA	NA
UHGV-0074538_57	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0074538_62	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0074538_65	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0074538_65	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0074538_66	PHROG	phrog_22444	NA	unknown function
UHGV-0074538_66	UniRef90	UniRef90_A0A5S3QIX1	Helix-turn-helix transcriptional regulator	NA
UHGV-0074538_66	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-0074538_66	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0074538_66	Structural annotation	PF05584, NF000243, COG0640	NA	NA
UHGV-0074538_68	PHROG	phrog_236	nucleotide kinase	other
UHGV-0074538_68	UniRef90	UniRef90_A0A8D9PG35	Nucelotide kinase	NA
UHGV-0074538_68	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0074538_68	Pfam	PF11753	NA	DUF3310
UHGV-0074538_68	Structural annotation	PF11753	NA	NA
UHGV-0074538_69	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0074538_69	UniRef90	UniRef90_A0A8D9PGJ8	MazG domain-containing protein	NA
UHGV-0074538_69	eggNOG-mapper	537007.BLAHAN_05009	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0074538_69	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0074538_69	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0074538_69	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0074538_70	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0074538_70	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0074538_70	Structural annotation	PF16677	NA	NA