UHGV-0074553

Genome information

Genome length 22,934 bps

CDS count 37

Completeness 60.39% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074553
vOTU ID	vOTU-029738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_116050
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.31
Jumbo phage	No

Genome content
Genome length	22,934 bps
GC content	30.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.89%
Average CDS length	577.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074553_2	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074553_2	UniRef90	UniRef90_UPI0013D81E82	endonuclease	NA
UHGV-0074553_2	eggNOG-mapper	393480.FNP_1683	NA	NA
UHGV-0074553_7	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0074553_7	UniRef90	UniRef90_A0A7U9CDH8	Phage terminase	NA
UHGV-0074553_7	eggNOG-mapper	632245.CLP_2620	Phage terminase, small subunit	NA
UHGV-0074553_7	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0074553_7	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0074553_7	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0074553_7	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0074553_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0074553_8	UniRef90	UniRef90_A0A7X5NX21	Terminase large subunit	NA
UHGV-0074553_8	eggNOG-mapper	1187894.I2E8V1_9CAUD	Phage Terminase	NA
UHGV-0074553_8	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0074553_8	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0074553_8	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0074553_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0074553_9	UniRef90	UniRef90_A0A7U9CFR8	Phage portal protein, HK97 family	NA
UHGV-0074553_9	eggNOG-mapper	1396.DJ87_977	phage portal protein, HK97 family	NA
UHGV-0074553_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0074553_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0074553_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0074553_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0074553_10	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0074553_10	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0074553_10	UniRef90	UniRef90_A0A7U9GLQ8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0074553_10	eggNOG-mapper	1567010.A0A0A7S0Y0_9VIRU	serine-type endopeptidase activity	NA
UHGV-0074553_10	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0074553_10	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0074553_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0074553_11	UniRef90	UniRef90_A0A7X5SS61	Phage major capsid protein	NA
UHGV-0074553_11	eggNOG-mapper	1567010.A0A0A7RWE1_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0074553_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0074553_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0074553_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0074553_12	PHROG	phrog_2616	NA	unknown function
UHGV-0074553_12	eggNOG-mapper	1382315.JPOI01000001_gene280	NA	NA
UHGV-0074553_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0074553_13	UniRef90	UniRef90_A0A7X5SRX0	Phage gp6-like head-tail connector protein	NA
UHGV-0074553_13	eggNOG-mapper	393480.FNP_1689	Phage gp6-like head-tail connector protein	NA
UHGV-0074553_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0074553_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0074553_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0074553_14	UniRef90	UniRef90_A0A7X5SRM2	Head-tail adaptor protein	NA
UHGV-0074553_14	eggNOG-mapper	536232.CLM_1661	Phage head-tail joining protein	NA
UHGV-0074553_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0074553_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0074553_15	UniRef90	UniRef90_A0A3F2ZRU7	Major surface protein 3	NA
UHGV-0074553_16	UniRef90	UniRef90_A0A1L3NFY6	Bacteriophage HK97-gp10, tail-component family protein	NA
UHGV-0074553_16	eggNOG-mapper	536232.CLM_1663	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0074553_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0074553_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0074553_17	PHROG	phrog_525	NA	unknown function
UHGV-0074553_17	eggNOG-mapper	318464.IO99_13730	NA	NA
UHGV-0074553_17	Pfam	PF20765	NA	DUF6838
UHGV-0074553_17	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0074553_18	PHROG	phrog_1480	tail sheath	tail
UHGV-0074553_18	UniRef90	UniRef90_UPI0013D20081	phage tail sheath protein	NA
UHGV-0074553_18	eggNOG-mapper	536232.CLM_1666	Phage tail sheath C-terminal domain	NA
UHGV-0074553_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0074553_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0074553_19	PHROG	phrog_365	tail protein	tail
UHGV-0074553_19	UniRef90	UniRef90_UPI000BFDC61C	phage tail tube protein	NA
UHGV-0074553_19	eggNOG-mapper	536232.CLM_1667	Phage tail tube protein	NA
UHGV-0074553_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0074553_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0074553_20	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0074553_20	eggNOG-mapper	536232.CLM_1668	NA	NA
UHGV-0074553_20	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0074553_21	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0074553_21	UniRef90	UniRef90_A0A3F2ZYT8	Putative prophage LambdaBa01, membrane protein	NA
UHGV-0074553_21	eggNOG-mapper	632245.CLP_2908	phage tail tape measure protein	NA
UHGV-0074553_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0074553_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0074553_22	PHROG	phrog_5184	NA	unknown function
UHGV-0074553_22	UniRef90	UniRef90_UPI00156DFCCE	cell wall-binding protein	NA
UHGV-0074553_22	eggNOG-mapper	536232.CLM_1671	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0074553_22	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0074553_22	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0074553_23	PHROG	phrog_400	tail protein	tail
UHGV-0074553_23	UniRef90	UniRef90_A0A0E3M9P1	NlpC/P60 domain-containing protein	NA
UHGV-0074553_23	eggNOG-mapper	536232.CLM_1672	Late control gene D protein	NA
UHGV-0074553_23	COG	COG3500	NA	NA
UHGV-0074553_23	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0074553_24	PHROG	phrog_579	NA	unknown function
UHGV-0074553_24	UniRef90	UniRef90_UPI000717B506	NA	NA
UHGV-0074553_24	Pfam	PF10844	NA	DUF2577
UHGV-0074553_24	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0074553_25	PHROG	phrog_120	baseplate protein	tail
UHGV-0074553_25	UniRef90	UniRef90_A0A7X5SR09	NA	NA
UHGV-0074553_25	eggNOG-mapper	536232.CLM_1674	NA	NA
UHGV-0074553_25	Pfam	PF10934	NA	DUF2634
UHGV-0074553_25	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0074553_25	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0074553_26	PHROG	phrog_6	baseplate protein	tail
UHGV-0074553_26	UniRef90	UniRef90_A0A7U9GM01	Baseplate_J domain-containing protein	NA
UHGV-0074553_26	eggNOG-mapper	536232.CLM_1675	Baseplate J-like protein	NA
UHGV-0074553_26	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0074553_26	COG	COG3299	NA	NA
UHGV-0074553_26	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0074553_28	PHROG	phrog_521	tail protein	tail
UHGV-0074553_28	UniRef90	UniRef90_UPI001788C293	NA	NA
UHGV-0074553_28	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0074553_28	COG	COG3778	NA	NA
UHGV-0074553_28	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0074553_29	eggNOG-mapper	1209989.TepiRe1_2591	NA	NA
UHGV-0074553_31	PHROG	phrog_20961	NA	unknown function
UHGV-0074553_31	eggNOG-mapper	1399115.U719_06780	NA	NA
UHGV-0074553_32	eggNOG-mapper	1230342.CTM_14473	NA	NA
UHGV-0074553_33	PHROG	phrog_1129	holin	lysis
UHGV-0074553_33	UniRef90	UniRef90_A0A1L3NKD6	Putative phage holin	NA
UHGV-0074553_33	eggNOG-mapper	1230342.CTM_01529	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0074553_33	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0074553_33	Structural annotation	PF16079	NA	NA
UHGV-0074553_34	KOfam	K07273	acm; lysozyme	NA
UHGV-0074553_34	PHROG	phrog_6219	endolysin	lysis
UHGV-0074553_34	UniRef90	UniRef90_A0A6B5ALU5	Lysozyme	NA
UHGV-0074553_34	eggNOG-mapper	999411.HMPREF1092_03098	family 25	NA
UHGV-0074553_34	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0074553_34	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0074553_34	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0074553_35	PHROG	phrog_2277	NA	unknown function
UHGV-0074553_35	eggNOG-mapper	536232.CLM_1684	NA	NA
UHGV-0074553_36	PHROG	phrog_30160	NA	unknown function
UHGV-0074553_36	UniRef90	UniRef90_A0A0E1KUP1	Putative amino acid ABC transporter, periplasmic substrate-binding protein	NA
UHGV-0074553_37	PHROG	phrog_13160	NA	unknown function
UHGV-0074553_37	UniRef90	UniRef90_A0A0E1KUQ7	Putative lipoprotein	NA
UHGV-0074553_37	eggNOG-mapper	536232.CLM_1686	NA	NA