UHGV-0074595

Genome information

Genome length 29,382 bps

CDS count 52

Completeness 50.95% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074595
vOTU ID	vOTU-039561
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137955
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.98
Jumbo phage	No

Genome content
Genome length	29,382 bps
GC content	38.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.07%
Average CDS length	524.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074595_1	KOfam	K14059	int; integrase	NA
UHGV-0074595_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0074595_1	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0074595_1	eggNOG-mapper	97139.C824_00125	Phage integrase family	NA
UHGV-0074595_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0074595_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0074595_1	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0074595_2	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0074595_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0074595_2	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0074595_3	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0074595_3	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0074595_3	AcrCatalog	cluster_47493	NA	NA
UHGV-0074595_3	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0074595_7	PHROG	phrog_874	NA	unknown function
UHGV-0074595_7	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0074595_7	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0074595_7	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0074595_9	PHROG	phrog_20593	NA	unknown function
UHGV-0074595_9	AcrCatalog	cluster_27421	NA	NA
UHGV-0074595_11	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0074595_12	PHROG	phrog_8684	NA	unknown function
UHGV-0074595_12	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-0074595_12	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0074595_12	Pfam	PF09643	YopX protein	YopX
UHGV-0074595_12	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0074595_12	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0074595_14	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0074595_14	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0074595_15	PHROG	phrog_21026	NA	unknown function
UHGV-0074595_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0074595_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0074595_18	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0074595_18	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0074595_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0074595_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0074595_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0074595_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0074595_19	PHROG	phrog_11769	NA	unknown function
UHGV-0074595_19	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0074595_19	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0074595_19	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0074595_19	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0074595_19	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0074595_20	PHROG	phrog_19106	NA	unknown function
UHGV-0074595_20	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0074595_20	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0074595_20	Structural annotation	TIGR01453	NA	NA
UHGV-0074595_24	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0074595_24	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0074595_24	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0074595_24	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0074595_24	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0074595_24	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0074595_24	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0074595_25	PHROG	phrog_25456	NA	unknown function
UHGV-0074595_26	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0074595_26	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0074595_26	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0074595_26	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0074595_27	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0074595_29	UniRef90	UniRef90_A0A3E4M3S1	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0074595_31	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0074595_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074595_31	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0074595_31	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0074595_31	Pfam	PF13476	AAA domain	AAA_23
UHGV-0074595_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0074595_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0074595_32	PHROG	phrog_26861	NA	unknown function
UHGV-0074595_32	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0074595_32	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0074595_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0074595_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0074595_32	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0074595_37	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0074595_37	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0074595_37	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0074595_37	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0074595_37	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0074595_37	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0074595_39	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0074595_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0074595_39	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0074595_39	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0074595_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0074595_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074595_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074595_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0074595_40	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0074595_40	Structural annotation	NF040910	NA	NA
UHGV-0074595_41	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0074595_43	PHROG	phrog_17196	kinase	other
UHGV-0074595_43	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0074595_43	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0074595_44	PHROG	phrog_18190	NA	unknown function
UHGV-0074595_44	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0074595_44	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0074595_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0074595_44	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0074595_45	PHROG	phrog_1194	NA	unknown function
UHGV-0074595_45	Pfam	PF20458	NA	DUF6711
UHGV-0074595_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0074595_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0074595_46	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0074595_46	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0074595_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0074595_46	COG	COG3617	Prophage antirepressor	NA
UHGV-0074595_46	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0074595_47	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0074595_47	Pfam	PF11611	NA	DUF4352
UHGV-0074595_48	eggNOG-mapper	861452.HMPREF9093_00473	NA	NA
UHGV-0074595_49	UniRef90	UniRef90_R5VKN7	RHS repeat-associated core domain-containing protein	NA
UHGV-0074595_49	eggNOG-mapper	634956.Geoth_0498	NA	NA
UHGV-0074595_50	UniRef90	UniRef90_R5NI28	Ntox35 domain-containing protein	NA
UHGV-0074595_50	eggNOG-mapper	471875.RUMLAC_00233	RHS repeat-associated core domain protein	NA
UHGV-0074595_50	Pfam	PF15534	Bacterial toxin 35	Ntox35
UHGV-0074595_50	COG	COG3209	NA	NA
UHGV-0074595_52	UniRef90	UniRef90_R5V0F8	Hemagglutinin/hemolysin family protein	NA
UHGV-0074595_52	eggNOG-mapper	888059.HMPREF9071_1023	domain, Protein	NA
UHGV-0074595_52	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA