UHGV-0074645

Genome information

Genome length 37,255 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074645
vOTU ID	vOTU-009159
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_134090
BioSample	SAMEA2737777
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.8
Jumbo phage	No

Genome content
Genome length	37,255 bps
GC content	45.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.79%
Average CDS length	674.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074645_1	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-0074645_1	PHROG	phrog_18805	NA	unknown function
UHGV-0074645_1	eggNOG-mapper	411473.RUMCAL_02506	dockerin type I repeat-containing domain protein	NA
UHGV-0074645_1	Pfam	PF02148	Zn-finger in ubiquitin-hydrolases and other protein	zf-UBP
UHGV-0074645_1	Pfam	PF05725	FNIP Repeat	FNIP
UHGV-0074645_1	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0074645_1	Pfam	PF20085	Protein-glutamine gamma-glutamyltransferase	TGL
UHGV-0074645_1	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0074645_1	Pfam	PF12799	Leucine Rich repeats (2 copies)	LRR_4
UHGV-0074645_1	Pfam	PF19553	NA	DUF6076
UHGV-0074645_1	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0074645_1	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0074645_1	COG	COG5492	NA	NA
UHGV-0074645_2	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0074645_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0074645_2	UniRef90	UniRef90_UPI000B891B3F	helix-turn-helix transcriptional regulator	NA
UHGV-0074645_2	eggNOG-mapper	1487921.DP68_09000	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0074645_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0074645_2	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0074645_3	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0074645_3	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0074645_3	UniRef90	UniRef90_A0A3C2BBF5	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0074645_3	eggNOG-mapper	1160721.RBI_II00519	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0074645_3	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0074645_3	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0074645_3	COG	COG0338	DNA-adenine methylase	NA
UHGV-0074645_3	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0074645_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0074645_4	PHROG	phrog_291	endolysin	lysis
UHGV-0074645_4	UniRef90	UniRef90_A0A349YST6	Peptidase_M15_3 domain-containing protein	NA
UHGV-0074645_4	eggNOG-mapper	411473.RUMCAL_01945	hydrolase, family 25	NA
UHGV-0074645_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0074645_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0074645_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0074645_4	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-0074645_5	PHROG	phrog_443	holin	lysis
UHGV-0074645_5	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0074645_5	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0074645_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0074645_5	Structural annotation	PF16945	NA	NA
UHGV-0074645_6	Structural annotation	PF11195	NA	NA
UHGV-0074645_7	PHROG	phrog_35590	NA	unknown function
UHGV-0074645_7	eggNOG-mapper	411473.RUMCAL_00613	Collagen triple helix repeat (20 copies)	NA
UHGV-0074645_7	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0074645_7	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0074645_8	PHROG	phrog_25888	NA	unknown function
UHGV-0074645_8	eggNOG-mapper	411473.RUMCAL_01941	cell adhesion	NA
UHGV-0074645_8	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0074645_8	Structural annotation	PF10651, COG3470	NA	NA
UHGV-0074645_9	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0074645_10	Structural annotation	PF05939, TIGR01633, COG4718	NA	NA
UHGV-0074645_11	PHROG	phrog_5218	NA	unknown function
UHGV-0074645_11	UniRef90	UniRef90_A0A3D5KWG5	PhageMin_Tail domain-containing protein	NA
UHGV-0074645_11	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0074645_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0074645_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0074645_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0074645_12	PHROG	phrog_706	NA	unknown function
UHGV-0074645_12	UniRef90	UniRef90_UPI00189AC67C	Gp15 family bacteriophage protein	NA
UHGV-0074645_12	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0074645_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0074645_12	Structural annotation	PF06854	NA	NA
UHGV-0074645_13	PHROG	phrog_4450	NA	unknown function
UHGV-0074645_13	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0074645_13	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0074645_13	Pfam	PF20378	NA	DUF6673
UHGV-0074645_13	Structural annotation	PF20378	NA	NA
UHGV-0074645_14	PHROG	phrog_3099	NA	unknown function
UHGV-0074645_14	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0074645_15	PHROG	phrog_3266	tail completion	connector
UHGV-0074645_15	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0074645_15	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0074645_15	Structural annotation	PF12691	NA	NA
UHGV-0074645_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0074645_16	UniRef90	UniRef90_A0A352TI11	Capsid protein	NA
UHGV-0074645_16	eggNOG-mapper	641112.ACOK01000073_gene2898	Minor capsid protein	NA
UHGV-0074645_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0074645_16	Structural annotation	PF11114	NA	NA
UHGV-0074645_17	PHROG	phrog_3366	NA	unknown function
UHGV-0074645_17	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0074645_17	Pfam	PF20536	NA	DUF6751
UHGV-0074645_17	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0074645_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0074645_18	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0074645_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0074645_19	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0074645_19	eggNOG-mapper	411473.RUMCAL_01930	NA	NA
UHGV-0074645_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0074645_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0074645_20	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0074645_20	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-0074645_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0074645_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0074645_24	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0074645_24	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0074645_24	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0074645_25	PHROG	phrog_1048	NA	unknown function
UHGV-0074645_25	UniRef90	UniRef90_A0A3D5KWH4	NA	NA
UHGV-0074645_25	eggNOG-mapper	411473.RUMCAL_01927	NA	NA
UHGV-0074645_25	Pfam	PF11195	NA	DUF2829
UHGV-0074645_25	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0074645_25	Structural annotation	PF11195	NA	NA
UHGV-0074645_26	PHROG	phrog_3675	NA	unknown function
UHGV-0074645_26	UniRef90	UniRef90_A0A1M7JY59	YjcQ protein	NA
UHGV-0074645_26	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0074645_26	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0074645_26	Structural annotation	PF09639, TIGR04176	NA	NA
UHGV-0074645_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0074645_28	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0074645_28	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0074645_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0074645_28	COG	COG2369	NA	NA
UHGV-0074645_28	Structural annotation	PF06152	NA	NA
UHGV-0074645_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0074645_29	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-0074645_29	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-0074645_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0074645_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0074645_30	PHROG	phrog_10250	NA	unknown function
UHGV-0074645_30	UniRef90	UniRef90_U2LZ34	Phage terminase, large subunit, PBSX family	NA
UHGV-0074645_30	eggNOG-mapper	411473.RUMCAL_01923	Phage terminase, large subunit, PBSX family	NA
UHGV-0074645_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0074645_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0074645_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0074645_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0074645_31	eggNOG-mapper	411473.RUMCAL_01921	NA	NA
UHGV-0074645_32	KOfam	K05785	rfaH; transcriptional antiterminator RfaH	NA
UHGV-0074645_32	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0074645_32	UniRef90	UniRef90_U2K8B7	Transcription termination/antitermination factor NusG	NA
UHGV-0074645_32	eggNOG-mapper	411473.RUMCAL_01920	Transcription termination factor nusG	NA
UHGV-0074645_32	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0074645_32	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0074645_32	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0074645_33	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0074645_33	UniRef90	UniRef90_UPI001D05DC57	NA	NA
UHGV-0074645_33	eggNOG-mapper	411473.RUMCAL_01919	NA	NA
UHGV-0074645_33	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0074645_33	Structural annotation	PF11985	NA	NA
UHGV-0074645_34	PHROG	phrog_25462	NA	unknown function
UHGV-0074645_34	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0074645_34	eggNOG-mapper	411473.RUMCAL_01918	NA	NA
UHGV-0074645_34	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0074645_35	PHROG	phrog_462	lipoprotein	other
UHGV-0074645_35	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0074645_36	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0074645_36	UniRef90	UniRef90_U2KR36	Mor transcription activator family protein	NA
UHGV-0074645_36	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-0074645_36	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0074645_36	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0074645_36	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0074645_37	PHROG	phrog_286	NA	unknown function
UHGV-0074645_37	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0074645_37	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-0074645_37	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0074645_37	Structural annotation	PF06252	NA	NA
UHGV-0074645_38	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0074645_38	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0074645_38	UniRef90	UniRef90_U2KRN6	IstB_IS21 domain-containing protein	NA
UHGV-0074645_38	eggNOG-mapper	411473.RUMCAL_01914	NA	NA
UHGV-0074645_38	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0074645_38	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0074645_38	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0074645_39	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0074645_39	eggNOG-mapper	411473.RUMCAL_01913	HNH endonuclease	NA
UHGV-0074645_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0074645_40	PHROG	phrog_5671	NA	unknown function
UHGV-0074645_40	eggNOG-mapper	411473.RUMCAL_01912	NA	NA
UHGV-0074645_41	PHROG	phrog_6244	NA	unknown function
UHGV-0074645_41	eggNOG-mapper	1232453.BAIF02000002_gene1275	YqaJ viral recombinase family	NA
UHGV-0074645_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0074645_42	PHROG	phrog_4292	NA	unknown function
UHGV-0074645_42	eggNOG-mapper	411473.RUMCAL_01910	NA	NA
UHGV-0074645_43	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0074645_43	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0074645_43	UniRef90	UniRef90_R7FFF2	AAA domain protein	NA
UHGV-0074645_43	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0074645_43	Pfam	PF13744	Helix-turn-helix domain	HTH_37
UHGV-0074645_43	Pfam	PF13401	AAA domain	AAA_22
UHGV-0074645_43	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0074645_43	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0074645_44	KOfam	K07497	K07497; putative transposase	NA
UHGV-0074645_44	PHROG	phrog_310	transposase	integration and excision
UHGV-0074645_44	UniRef90	UniRef90_U2LZ18	Integrase catalytic domain-containing protein	NA
UHGV-0074645_44	eggNOG-mapper	411473.RUMCAL_01908	Mu transposase, C-terminal	NA
UHGV-0074645_44	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0074645_44	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0074645_44	Pfam	PF02914	Bacteriophage Mu transposase	DDE_2
UHGV-0074645_44	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0074645_44	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0074645_44	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0074645_47	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0074645_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0074645_47	UniRef90	UniRef90_UPI00096B318E	helix-turn-helix transcriptional regulator	NA
UHGV-0074645_47	eggNOG-mapper	1051646.VITU9109_07779	PFAM helix-turn-helix domain protein	NA
UHGV-0074645_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0074645_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074645_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074645_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0074645_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0074645_50	UniRef90	UniRef90_U2K899	Bacteriophage CI repressor protein	NA
UHGV-0074645_50	eggNOG-mapper	411473.RUMCAL_01900	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0074645_50	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0074645_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074645_50	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA