UHGV-0074672

Genome information

Genome length 37,346 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074672
vOTU ID	vOTU-014711
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_131322
BioSample	SAMEA2737728
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.58
Jumbo phage	No

Genome content
Genome length	37,346 bps
GC content	60.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.23%
Average CDS length	556.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074672_1	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0074672_2	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0074672_3	PHROG	phrog_16490	NA	unknown function
UHGV-0074672_3	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0074672_5	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0074672_7	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0074672_8	PHROG	phrog_937	hemolysin	other
UHGV-0074672_8	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0074672_9	PHROG	phrog_1493	endolysin	lysis
UHGV-0074672_9	UniRef90	UniRef90_A0A1C6GMR6	NlpC/P60 family	NA
UHGV-0074672_9	eggNOG-mapper	871963.Desdi_1346	NLP P60 protein	NA
UHGV-0074672_9	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0074672_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0074672_9	Structural annotation	PF01471, PF00877, NF033742, NF038080, COG0791	NA	NA
UHGV-0074672_13	PHROG	phrog_24267	NA	unknown function
UHGV-0074672_13	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0074672_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0074672_13	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0074672_14	PHROG	phrog_13564	minor tail protein	tail
UHGV-0074672_14	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0074672_15	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0074672_15	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-0074672_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0074672_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0074672_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0074672_16	Structural annotation	PF11836	NA	NA
UHGV-0074672_17	PHROG	phrog_88	major tail protein	tail
UHGV-0074672_17	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0074672_17	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0074672_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0074672_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0074672_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0074672_18	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0074672_18	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0074672_18	Structural annotation	TIGR01725	NA	NA
UHGV-0074672_19	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0074672_19	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0074672_20	PHROG	phrog_19734	NA	unknown function
UHGV-0074672_20	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0074672_20	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0074672_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0074672_21	PHROG	phrog_749	NA	unknown function
UHGV-0074672_21	UniRef90	UniRef90_UPI001C0F1EE0	head-tail connector protein	NA
UHGV-0074672_21	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0074672_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0074672_22	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0074672_22	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0074672_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0074672_22	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0074672_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0074672_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0074672_22	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0074672_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0074672_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0074672_23	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0074672_23	eggNOG-mapper	1384484.AEQU_1181	Clp protease	NA
UHGV-0074672_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0074672_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0074672_23	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0074672_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0074672_24	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0074672_24	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0074672_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0074672_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0074672_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0074672_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0074672_25	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0074672_25	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0074672_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0074672_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0074672_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0074672_26	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0074672_26	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0074672_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0074672_26	COG	COG5484	NA	NA
UHGV-0074672_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0074672_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0074672_27	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0074672_27	UniRef90	UniRef90_UPI00055C7461	site-specific DNA-methyltransferase	NA
UHGV-0074672_27	eggNOG-mapper	371042.NG99_23680	DNA methylase	NA
UHGV-0074672_27	PADLOC	MTase_II_00051	Type II methyltransferase	RM
UHGV-0074672_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0074672_27	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0074672_27	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0074672_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074672_28	UniRef90	UniRef90_UPI001958184D	HNH endonuclease	NA
UHGV-0074672_28	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0074672_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0074672_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0074672_30	eggNOG-mapper	1134413.ANNK01000120_gene2036	NA	NA
UHGV-0074672_30	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0074672_30	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0074672_30	Structural annotation	PF05263, TIGR01636, COG1595	NA	NA
UHGV-0074672_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0074672_32	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0074672_32	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0074672_34	KOfam	K05840	DRD5; dopamine receptor D5	NA
UHGV-0074672_34	PHROG	phrog_15773	NA	unknown function
UHGV-0074672_34	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0074672_36	PHROG	phrog_15609	NA	unknown function
UHGV-0074672_36	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-0074672_36	eggNOG-mapper	1123288.SOV_1c10530	NA	NA
UHGV-0074672_36	Pfam	PF11300	NA	DUF3102
UHGV-0074672_36	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0074672_36	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0074672_37	PHROG	phrog_8470	NA	unknown function
UHGV-0074672_37	UniRef90	UniRef90_UPI00164B8CC7	PcfJ domain-containing protein	NA
UHGV-0074672_37	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0074672_37	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0074672_37	Structural annotation	PF14284	NA	NA
UHGV-0074672_38	PHROG	phrog_38338	NA	unknown function
UHGV-0074672_38	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-0074672_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0074672_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0074672_50	UniRef90	UniRef90_A0A1C6CFH8	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0074672_50	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0074672_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0074672_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0074672_52	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0074672_52	UniRef90	UniRef90_A0A3E3K2T1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0074672_52	eggNOG-mapper	502558.EGYY_24930	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0074672_52	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0074672_52	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0074672_52	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0074672_53	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0074672_53	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0074672_53	UniRef90	UniRef90_A0A176U291	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0074672_53	eggNOG-mapper	397287.C807_03671	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0074672_53	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0074672_53	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0074672_53	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0074672_56	eggNOG-mapper	1341157.RF007C_15645	NA	NA
UHGV-0074672_56	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-0074672_58	UniRef90	UniRef90_A0A174XWS3	Bacterial regulatory proteins, luxR family	NA
UHGV-0074672_58	eggNOG-mapper	485916.Dtox_2202	Plasmid pRiA4b ORF-3-like protein	NA
UHGV-0074672_58	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0074672_58	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0074672_59	UniRef90	UniRef90_A0A357JC47	RHH_5 domain-containing protein	NA
UHGV-0074672_59	Pfam	PF08681	NA	DUF1778
UHGV-0074672_59	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0074672_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0074672_61	PHROG	phrog_95	integrase	integration and excision
UHGV-0074672_61	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0074672_61	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0074672_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0074672_61	Pfam	PF07508	Recombinase	Recombinase
UHGV-0074672_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0074672_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0074672_61	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA