UHGV-0074819

Genome information

vOTU vOTU-019838

Genome length 19,178 bps

CDS count 32

Completeness 57.12% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0074819
vOTU ID	vOTU-019838
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_133797
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.88
Jumbo phage	No

Genome content
Genome length	19,178 bps
GC content	29.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	95.45%
Average CDS length	573.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0074819_2	PHROG	phrog_1220	head protein	head and packaging
UHGV-0074819_2	UniRef90	UniRef90_R5M2M1	Conserved domain protein	NA
UHGV-0074819_2	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0074819_2	Structural annotation	PF20747, PF02839	NA	NA
UHGV-0074819_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0074819_3	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0074819_3	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0074819_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0074819_3	Structural annotation	PF14594, PF14870, MF_01348, TIGR01665, NF010237, COG4926, COG4447	NA	NA
UHGV-0074819_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0074819_4	UniRef90	UniRef90_R6SIV1	Conserved domain protein	NA
UHGV-0074819_4	eggNOG-mapper	768704.Desmer_4454	PFAM Phage tail protein	NA
UHGV-0074819_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0074819_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0074819_4	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0074819_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0074819_5	UniRef90	UniRef90_A0A7X8M4B4	Phage tail protein (Fragment)	NA
UHGV-0074819_5	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0074819_5	COG	COG1511	NA	NA
UHGV-0074819_5	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0074819_6	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0074819_6	Structural annotation	PF11836	NA	NA
UHGV-0074819_8	PHROG	phrog_88	major tail protein	tail
UHGV-0074819_8	UniRef90	UniRef90_R6GFP9	Putative major tail protein	NA
UHGV-0074819_8	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0074819_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0074819_9	PHROG	phrog_78	tail terminator	connector
UHGV-0074819_9	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0074819_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0074819_10	UniRef90	UniRef90_R6GE33	Phage protein HK97 gp10 family	NA
UHGV-0074819_10	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0074819_10	Structural annotation	TIGR01725	NA	NA
UHGV-0074819_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0074819_11	eggNOG-mapper	1235792.C808_03061	NA	NA
UHGV-0074819_11	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0074819_12	PHROG	phrog_5223	neck protein	connector
UHGV-0074819_12	eggNOG-mapper	411459.RUMOBE_00934	NA	NA
UHGV-0074819_12	Structural annotation	TIGR01560	NA	NA
UHGV-0074819_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0074819_14	UniRef90	UniRef90_C3DN82	Phage major capsid protein	NA
UHGV-0074819_14	eggNOG-mapper	315730.BcerKBAB4_3428	Phage capsid family	NA
UHGV-0074819_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0074819_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0074819_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0074819_14	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0074819_15	KOfam	K06904	NA	NA
UHGV-0074819_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0074819_15	UniRef90	UniRef90_UPI000B44726A	HK97 family phage prohead protease	NA
UHGV-0074819_15	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-0074819_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0074819_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0074819_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0074819_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0074819_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0074819_16	UniRef90	UniRef90_A0A7Y9A6P6	HK97 family phage portal protein	NA
UHGV-0074819_16	eggNOG-mapper	290402.Cbei_0907	Portal protein	NA
UHGV-0074819_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0074819_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0074819_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0074819_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0074819_17	UniRef90	UniRef90_A0A521C5M4	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0074819_17	eggNOG-mapper	1443122.Z958_05970	Terminase	NA
UHGV-0074819_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0074819_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0074819_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0074819_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0074819_18	PHROG	phrog_1066	NA	unknown function
UHGV-0074819_18	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0074819_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0074819_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0074819_19	UniRef90	UniRef90_A0A6F9E568	HNHc domain-containing protein	NA
UHGV-0074819_19	eggNOG-mapper	198094.BA_0461	HNH endonuclease	NA
UHGV-0074819_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0074819_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0074819_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0074819_20	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-0074819_22	PHROG	phrog_3886	NA	unknown function
UHGV-0074819_22	eggNOG-mapper	1497679.EP56_05675	NA	NA
UHGV-0074819_23	KOfam	K03744	lemA; LemA protein	NA
UHGV-0074819_23	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0074819_23	UniRef90	UniRef90_A0A1Q6M2C0	LemA family protein	NA
UHGV-0074819_23	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0074819_23	Pfam	PF04011	LemA family	LemA
UHGV-0074819_23	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0074819_23	Structural annotation	PF04011, NF040966, COG1704	NA	NA