UHGV-0075091

Genome information

Genome length 34,889 bps

CDS count 54

Completeness 67.72% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075091
vOTU ID	vOTU-029658
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_129028
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.37
Jumbo phage	No

Genome content
Genome length	34,889 bps
GC content	58.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.77%
Average CDS length	608.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075091_1	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-0075091_2	UniRef90	UniRef90_UPI00196212E2	NA	NA
UHGV-0075091_2	eggNOG-mapper	397291.C804_03513	NA	NA
UHGV-0075091_2	Pfam	PF12083	NA	DUF3560
UHGV-0075091_2	Structural annotation	PF12083, PF19881, TIGR00739, COG1862	NA	NA
UHGV-0075091_5	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0075091_6	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0075091_7	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0075091_7	UniRef90	UniRef90_A0A3E3I255	NA	NA
UHGV-0075091_7	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0075091_7	Pfam	PF14359	NA	DUF4406
UHGV-0075091_7	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0075091_9	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0075091_9	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-0075091_9	eggNOG-mapper	871963.Desdi_1740	NLP P60 protein	NA
UHGV-0075091_9	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0075091_9	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0075091_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0075091_9	Structural annotation	PF00877, PF18342, NF033742, COG0791, COG3103	NA	NA
UHGV-0075091_11	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0075091_11	Structural annotation	NF040910	NA	NA
UHGV-0075091_13	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0075091_13	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0075091_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0075091_15	PHROG	phrog_24267	NA	unknown function
UHGV-0075091_15	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0075091_15	COG	COG4675	Phage tail collar domain	NA
UHGV-0075091_17	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0075091_17	eggNOG-mapper	1536769.P40081_01145	Prophage endopeptidase tail	NA
UHGV-0075091_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0075091_17	COG	COG4926	Phage-related protein	NA
UHGV-0075091_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0075091_18	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0075091_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0075091_19	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0075091_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0075091_19	Structural annotation	PF20155, MF_04138, TIGR01760	NA	NA
UHGV-0075091_23	PHROG	phrog_885	major tail protein	tail
UHGV-0075091_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0075091_23	eggNOG-mapper	411465.PEPMIC_00741	NA	NA
UHGV-0075091_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0075091_24	Structural annotation	PF11367	NA	NA
UHGV-0075091_25	PHROG	phrog_17977	NA	unknown function
UHGV-0075091_25	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0075091_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0075091_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0075091_27	PHROG	phrog_29	major head protein	head and packaging
UHGV-0075091_27	UniRef90	UniRef90_K1TJK6	Phage protein (Fragment)	NA
UHGV-0075091_27	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0075091_27	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0075091_27	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0075091_27	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0075091_28	PHROG	phrog_909	major head protein	head and packaging
UHGV-0075091_28	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0075091_28	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0075091_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0075091_29	UniRef90	UniRef90_R7ICU6	Fibronectin autolysin	NA
UHGV-0075091_29	Structural annotation	PF06810	NA	NA
UHGV-0075091_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0075091_30	UniRef90	UniRef90_UPI00065E143B	HK97 gp10 family phage protein	NA
UHGV-0075091_30	eggNOG-mapper	509191.AEDB02000075_gene2797	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0075091_30	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0075091_31	PHROG	phrog_859	portal protein	head and packaging
UHGV-0075091_31	UniRef90	UniRef90_K1T614	Minor head protein	NA
UHGV-0075091_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0075091_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0075091_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0075091_32	UniRef90	UniRef90_K1SG85	Phage portal protein, SPP1	NA
UHGV-0075091_32	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0075091_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0075091_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0075091_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0075091_33	UniRef90	UniRef90_D2J053	Terminase large subunit	NA
UHGV-0075091_33	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0075091_33	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0075091_35	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0075091_36	KOfam	K15256	cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]	NA
UHGV-0075091_36	PHROG	phrog_4752	tRNA methyltransferase	other
UHGV-0075091_36	UniRef90	UniRef90_A0A7V9U5L6	Methyltransferase domain-containing protein	NA
UHGV-0075091_36	eggNOG-mapper	1226322.HMPREF1545_03542	trans-aconitate 2-methyltransferase activity	NA
UHGV-0075091_36	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0075091_36	COG	COG4106	Trans-aconitate methyltransferase	NA
UHGV-0075091_37	eggNOG-mapper	1226322.HMPREF1545_03542	trans-aconitate 2-methyltransferase activity	NA
UHGV-0075091_37	COG	COG4106	Trans-aconitate methyltransferase	NA
UHGV-0075091_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0075091_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0075091_38	UniRef90	UniRef90_A0A843MF59	DNA cytosine methyltransferase	NA
UHGV-0075091_38	eggNOG-mapper	1121382.JQKG01000001_gene2513	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0075091_38	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0075091_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0075091_38	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075091_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0075091_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0075091_39	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0075091_39	UniRef90	UniRef90_A0A2N5KYN6	Chromosome partitioning protein ParB	NA
UHGV-0075091_39	eggNOG-mapper	1416334.X2CXX2_9CAUD	N-methyltransferase activity	NA
UHGV-0075091_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0075091_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0075091_39	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0075091_42	PHROG	phrog_27197	NA	unknown function
UHGV-0075091_42	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0075091_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0075091_42	Structural annotation	NF007410	NA	NA
UHGV-0075091_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0075091_44	Pfam	PF07374	NA	DUF1492
UHGV-0075091_44	Structural annotation	PF04545, MF_00674, NF001072, COG1342	NA	NA
UHGV-0075091_46	PHROG	phrog_824	NA	unknown function
UHGV-0075091_46	UniRef90	UniRef90_A0A645CPG3	VRR-NUC domain-containing protein	NA
UHGV-0075091_46	eggNOG-mapper	768710.DesyoDRAFT_5233	VRR-NUC domain	NA
UHGV-0075091_46	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0075091_46	Structural annotation	PF08774	NA	NA
UHGV-0075091_53	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0075091_53	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0075091_53	UniRef90	UniRef90_A0A3B8XWU8	SF4 helicase domain-containing protein	NA
UHGV-0075091_53	eggNOG-mapper	1307759.JOMJ01000003_gene1934	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0075091_53	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0075091_53	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0075091_53	COG	COG0305	Replicative DNA helicase	NA
UHGV-0075091_53	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA