UHGV-0075201

Genome information

Genome length 51,729 bps

CDS count 86

Completeness 100.00% (complete)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075201
vOTU ID	vOTU-045124
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127789
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.24
Jumbo phage	No

Genome content
Genome length	51,729 bps
GC content	48.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	90.67%
Average CDS length	550.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075201_1	UniRef90	UniRef90_A0A7M1RSZ3	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0075201_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0075201_2	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0075201_2	Structural annotation	PF12510	NA	NA
UHGV-0075201_3	PHROG	phrog_20016	NA	unknown function
UHGV-0075201_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0075201_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0075201_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0075201_4	PHROG	phrog_16490	NA	unknown function
UHGV-0075201_4	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0075201_5	PHROG	phrog_22984	NA	unknown function
UHGV-0075201_6	PHROG	phrog_21718	NA	unknown function
UHGV-0075201_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0075201_7	PHROG	phrog_3754	NA	unknown function
UHGV-0075201_7	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0075201_8	PHROG	phrog_3243	NA	unknown function
UHGV-0075201_8	eggNOG-mapper	1227266.HMPREF1551_02099	NA	NA
UHGV-0075201_8	Structural annotation	PF17185, MF_00075, NF007814, COG0361	NA	NA
UHGV-0075201_9	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0075201_9	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0075201_10	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0075201_10	PHROG	phrog_18955	NA	unknown function
UHGV-0075201_10	UniRef90	UniRef90_A0A810Q4Z7	SLH domain-containing protein	NA
UHGV-0075201_10	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-0075201_10	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0075201_10	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0075201_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075201_10	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0075201_12	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-0075201_15	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0075201_16	PHROG	phrog_19618	tail collar protein	tail
UHGV-0075201_16	UniRef90	UniRef90_A0A8I1MA06	Tail fiber protein	NA
UHGV-0075201_16	eggNOG-mapper	1177928.TH2_09524	Phage Tail Collar Domain	NA
UHGV-0075201_16	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0075201_16	COG	COG4675	Phage tail collar domain	NA
UHGV-0075201_16	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0075201_18	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0075201_19	PHROG	phrog_10898	NA	unknown function
UHGV-0075201_19	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0075201_19	eggNOG-mapper	1347368.HG964403_gene4490	S-layer homology domain	NA
UHGV-0075201_19	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0075201_19	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0075201_21	PHROG	phrog_19695	NA	unknown function
UHGV-0075201_21	eggNOG-mapper	476272.RUMHYD_01995	NA	NA
UHGV-0075201_23	eggNOG-mapper	1235797.C816_04177	alginic acid biosynthetic process	NA
UHGV-0075201_23	COG	COG1511	NA	NA
UHGV-0075201_25	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0075201_25	UniRef90	UniRef90_A0A810QCC8	Peptidase S74 domain-containing protein	NA
UHGV-0075201_25	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0075201_25	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0075201_25	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0075201_26	PHROG	phrog_6616	tail protein	tail
UHGV-0075201_26	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0075201_26	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0075201_26	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0075201_27	PHROG	phrog_1194	NA	unknown function
UHGV-0075201_27	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0075201_27	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0075201_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0075201_28	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0075201_28	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0075201_28	COG	COG1511	NA	NA
UHGV-0075201_29	PHROG	phrog_806	NA	unknown function
UHGV-0075201_29	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0075201_29	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0075201_29	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0075201_29	Pfam	PF11611	NA	DUF4352
UHGV-0075201_29	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0075201_30	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0075201_30	UniRef90	UniRef90_A0A7X5DZ93	Rha family transcriptional regulator	NA
UHGV-0075201_30	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0075201_30	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0075201_30	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0075201_30	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0075201_30	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0075201_31	PHROG	phrog_33872	NA	unknown function
UHGV-0075201_32	PHROG	phrog_706	NA	unknown function
UHGV-0075201_32	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0075201_32	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0075201_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0075201_32	Structural annotation	PF06854	NA	NA
UHGV-0075201_33	PHROG	phrog_11299	NA	unknown function
UHGV-0075201_33	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0075201_33	Structural annotation	PF10666	NA	NA
UHGV-0075201_34	PHROG	phrog_3099	NA	unknown function
UHGV-0075201_34	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0075201_34	Structural annotation	TIGR02126	NA	NA
UHGV-0075201_35	PHROG	phrog_3266	tail completion	connector
UHGV-0075201_35	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0075201_35	Structural annotation	PF12691	NA	NA
UHGV-0075201_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0075201_36	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0075201_36	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0075201_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0075201_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0075201_37	PHROG	phrog_3366	NA	unknown function
UHGV-0075201_37	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0075201_37	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0075201_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0075201_38	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0075201_39	PHROG	phrog_29	major head protein	head and packaging
UHGV-0075201_39	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0075201_39	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0075201_39	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0075201_39	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0075201_40	PHROG	phrog_909	major head protein	head and packaging
UHGV-0075201_40	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0075201_40	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0075201_40	Structural annotation	PF02924	NA	NA
UHGV-0075201_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0075201_41	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0075201_41	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0075201_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0075201_41	Structural annotation	PF06810	NA	NA
UHGV-0075201_42	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0075201_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0075201_43	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0075201_43	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0075201_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0075201_43	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0075201_43	COG	COG2369	NA	NA
UHGV-0075201_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0075201_44	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0075201_44	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0075201_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0075201_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075201_45	PHROG	phrog_10250	NA	unknown function
UHGV-0075201_45	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0075201_45	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0075201_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0075201_45	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0075201_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0075201_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075201_45	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0075201_46	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0075201_46	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0075201_46	Structural annotation	PF13542	NA	NA
UHGV-0075201_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0075201_47	UniRef90	UniRef90_A0A1V0QCE9	Bro-N domain-containing protein	NA
UHGV-0075201_47	eggNOG-mapper	411467.BACCAP_02726	BRO family, N-terminal domain	NA
UHGV-0075201_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0075201_47	COG	COG3617	Prophage antirepressor	NA
UHGV-0075201_47	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0075201_50	PHROG	phrog_924	NA	unknown function
UHGV-0075201_50	UniRef90	UniRef90_U2BA60	NA	NA
UHGV-0075201_50	Pfam	PF04448	NA	DUF551
UHGV-0075201_50	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0075201_52	UniRef90	UniRef90_A0A1C5WAG7	Restriction alleviation protein, Lar family	NA
UHGV-0075201_52	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0075201_52	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0075201_52	Structural annotation	PF14354	NA	NA
UHGV-0075201_53	PHROG	phrog_8684	NA	unknown function
UHGV-0075201_53	UniRef90	UniRef90_U2R3B6	YopX domain-containing protein	NA
UHGV-0075201_53	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0075201_53	Pfam	PF09643	YopX protein	YopX
UHGV-0075201_53	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0075201_53	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0075201_54	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0075201_54	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0075201_54	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0075201_54	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0075201_55	Structural annotation	PF04586, TIGR01543	NA	NA
UHGV-0075201_56	PHROG	phrog_1934	NA	unknown function
UHGV-0075201_56	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-0075201_56	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0075201_56	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0075201_56	Structural annotation	PF11672	NA	NA
UHGV-0075201_57	PHROG	phrog_22543	NA	unknown function
UHGV-0075201_58	PHROG	phrog_38832	NA	unknown function
UHGV-0075201_59	PHROG	phrog_37865	NA	unknown function
UHGV-0075201_63	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0075201_63	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0075201_65	UniRef90	UniRef90_UPI0012AC12CD	Lar family restriction alleviation protein	NA
UHGV-0075201_65	eggNOG-mapper	1226322.HMPREF1545_00021	Restriction alleviation protein Lar	NA
UHGV-0075201_65	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0075201_65	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0075201_67	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0075201_67	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0075201_67	UniRef90	UniRef90_A0A1C5W9J7	DNA repair protein RadA	NA
UHGV-0075201_67	eggNOG-mapper	397290.C810_01519	NA	NA
UHGV-0075201_67	Pfam	PF13481	AAA domain	AAA_25
UHGV-0075201_67	COG	COG0305	Replicative DNA helicase	NA
UHGV-0075201_67	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0075201_68	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0075201_68	UniRef90	UniRef90_A0A174F2L9	NA	NA
UHGV-0075201_68	eggNOG-mapper	1121947.AUHK01000002_gene919	DnaD domain protein	NA
UHGV-0075201_68	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0075201_71	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0075201_71	UniRef90	UniRef90_A0A1C5W9A3	ERCC4 domain-containing protein	NA
UHGV-0075201_71	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0075201_71	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0075201_71	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0075201_71	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0075201_72	PHROG	phrog_18107	NA	unknown function
UHGV-0075201_72	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0075201_72	Structural annotation	PF05037	NA	NA
UHGV-0075201_74	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0075201_74	UniRef90	UniRef90_A0A8J6M3C9	AAA family ATPase	NA
UHGV-0075201_74	eggNOG-mapper	903814.ELI_1273	AAA domain	NA
UHGV-0075201_74	Pfam	PF13479	AAA domain	AAA_24
UHGV-0075201_74	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0075201_77	PHROG	phrog_25245	NA	unknown function
UHGV-0075201_77	UniRef90	UniRef90_A0A810Q5U9	3D domain-containing protein	NA
UHGV-0075201_77	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-0075201_77	Pfam	PF06725	3D domain	3D
UHGV-0075201_77	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0075201_81	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0075201_81	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0075201_81	eggNOG-mapper	479434.Sthe_2230	sequence-specific DNA binding	NA
UHGV-0075201_81	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0075201_81	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0075201_81	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0075201_82	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0075201_82	PHROG	phrog_19856	NA	unknown function
UHGV-0075201_82	UniRef90	UniRef90_UPI00068633D6	restriction endonuclease	NA
UHGV-0075201_82	eggNOG-mapper	483218.BACPEC_00447	Restriction endonuclease	NA
UHGV-0075201_82	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0075201_82	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0075201_82	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0075201_83	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0075201_83	eggNOG-mapper	1408323.JQKK01000009_gene1100	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0075201_83	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075201_83	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0075201_85	PHROG	phrog_5783	NA	unknown function
UHGV-0075201_85	UniRef90	UniRef90_A0A810Q595	Helicase	NA
UHGV-0075201_85	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-0075201_85	Pfam	PF01936	NYN domain	NYN
UHGV-0075201_85	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0075201_85	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0075201_86	KOfam	K14059	int; integrase	NA
UHGV-0075201_86	PHROG	phrog_1	integrase	integration and excision
UHGV-0075201_86	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0075201_86	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0075201_86	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075201_86	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0075201_86	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA