UHGV-0075208

Genome information

Genome length 32,498 bps

CDS count 44

Completeness 99.82% (high-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075208
vOTU ID	vOTU-009313
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_107402
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.82% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.33
Jumbo phage	No

Genome content
Genome length	32,498 bps
GC content	43.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.66%
Average CDS length	694.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075208_1	PHROG	phrog_23052	NA	unknown function
UHGV-0075208_1	eggNOG-mapper	483218.BACPEC_01320	NA	NA
UHGV-0075208_1	Structural annotation	PF14879, PF05113, NF033848, NF033147, COG3500, COG4935	NA	NA
UHGV-0075208_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0075208_3	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0075208_3	UniRef90	UniRef90_A0A373ZD47	Phage tail tape measure protein	NA
UHGV-0075208_3	eggNOG-mapper	180332.JTGN01000004_gene2272	Phage tail tape measure protein, TP901 family	NA
UHGV-0075208_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0075208_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0075208_3	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0075208_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0075208_4	PHROG	phrog_709	NA	unknown function
UHGV-0075208_4	Structural annotation	PF11836	NA	NA
UHGV-0075208_5	PHROG	phrog_88	major tail protein	tail
UHGV-0075208_5	UniRef90	UniRef90_A0A373ZCY5	Phage tail protein	NA
UHGV-0075208_5	eggNOG-mapper	663278.Ethha_1843	phage major tail protein, phi13 family	NA
UHGV-0075208_5	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0075208_5	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0075208_6	PHROG	phrog_78	tail terminator	connector
UHGV-0075208_6	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0075208_6	Structural annotation	PF20765	NA	NA
UHGV-0075208_7	UniRef90	UniRef90_UPI00189E13A9	HK97 gp10 family phage protein	NA
UHGV-0075208_7	eggNOG-mapper	1341151.ASZU01000004_gene257	NA	NA
UHGV-0075208_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0075208_7	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0075208_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0075208_8	UniRef90	UniRef90_A0A3R6UXW7	Phage head-tail adapter protein	NA
UHGV-0075208_8	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0075208_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0075208_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0075208_9	PHROG	phrog_2550	NA	unknown function
UHGV-0075208_9	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0075208_9	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0075208_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0075208_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0075208_10	UniRef90	UniRef90_A0A373ZD06	Phage major capsid protein	NA
UHGV-0075208_10	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0075208_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0075208_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0075208_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0075208_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0075208_11	KOfam	K06904	NA	NA
UHGV-0075208_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0075208_11	UniRef90	UniRef90_A0A373ZF38	HK97 family phage prohead protease	NA
UHGV-0075208_11	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0075208_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0075208_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0075208_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0075208_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0075208_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0075208_12	UniRef90	UniRef90_A0A373ZD56	Phage portal protein	NA
UHGV-0075208_12	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0075208_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0075208_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0075208_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0075208_12	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0075208_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0075208_13	UniRef90	UniRef90_A0A373ZFM8	Terminase large subunit	NA
UHGV-0075208_13	eggNOG-mapper	1121428.DESHY_20134___1	Phage Terminase	NA
UHGV-0075208_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0075208_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0075208_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0075208_13	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0075208_14	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0075208_14	UniRef90	UniRef90_R5V087	Phage terminase small subunit P27 family	NA
UHGV-0075208_14	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0075208_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0075208_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0075208_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0075208_15	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075208_15	UniRef90	UniRef90_UPI00189E7D6D	HNH endonuclease	NA
UHGV-0075208_15	eggNOG-mapper	358681.BBR47_29120	HNH nucleases	NA
UHGV-0075208_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0075208_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0075208_15	Structural annotation	TIGR02646	NA	NA
UHGV-0075208_16	PHROG	phrog_199	holin	lysis
UHGV-0075208_16	UniRef90	UniRef90_UPI001D0ECA44	phage holin family protein	NA
UHGV-0075208_16	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0075208_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0075208_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0075208_16	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0075208_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0075208_18	PHROG	phrog_11237	NA	unknown function
UHGV-0075208_18	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0075208_19	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0075208_19	PHROG	phrog_435	endolysin	lysis
UHGV-0075208_19	UniRef90	UniRef90_A0A3R6ZZA0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075208_19	eggNOG-mapper	1408437.JNJN01000037_gene448	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075208_19	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0075208_19	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075208_19	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0075208_21	UniRef90	UniRef90_A0A174QL97	Chemotaxis protein	NA
UHGV-0075208_21	eggNOG-mapper	610130.Closa_1388	NA	NA
UHGV-0075208_21	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0075208_23	PHROG	phrog_7566	NA	unknown function
UHGV-0075208_23	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0075208_24	PHROG	phrog_20593	NA	unknown function
UHGV-0075208_25	PHROG	phrog_24368	NA	unknown function
UHGV-0075208_27	PHROG	phrog_20441	NA	unknown function
UHGV-0075208_27	UniRef90	UniRef90_UPI00189AA79A	NA	NA
UHGV-0075208_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0075208_28	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0075208_28	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0075208_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0075208_28	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0075208_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0075208_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0075208_29	UniRef90	UniRef90_A0A3R6VZF5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075208_29	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0075208_29	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0075208_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0075208_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0075208_29	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0075208_30	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0075208_30	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0075208_30	UniRef90	UniRef90_A0A373ZDW3	DNA methylase N-4	NA
UHGV-0075208_30	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0075208_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0075208_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0075208_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0075208_30	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0075208_31	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0075208_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0075208_32	UniRef90	UniRef90_A0A417PKX1	RNase H type-1 domain-containing protein	NA
UHGV-0075208_32	eggNOG-mapper	1116472.MGMO_8c00720	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0075208_32	Pfam	PF00075	RNase H	RNase_H
UHGV-0075208_32	COG	COG0328	Ribonuclease HI	NA
UHGV-0075208_32	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0075208_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0075208_33	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0075208_33	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0075208_35	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0075208_35	Structural annotation	PF20063	NA	NA
UHGV-0075208_36	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0075208_36	PHROG	phrog_5696	NA	unknown function
UHGV-0075208_36	UniRef90	UniRef90_A0A8E3SKS1	N-6 DNA methylase	NA
UHGV-0075208_36	eggNOG-mapper	1245471.PCA10_p0930	N-6 DNA Methylase	NA
UHGV-0075208_36	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0075208_36	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0075208_36	Structural annotation	COG0286	NA	NA
UHGV-0075208_37	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0075208_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0075208_37	UniRef90	UniRef90_UPI001DC26F47	tyrosine-type recombinase/integrase	NA
UHGV-0075208_37	eggNOG-mapper	689781.AUJX01000017_gene2491	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0075208_37	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0075208_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075208_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0075208_37	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0075208_38	PHROG	phrog_31564	NA	unknown function
UHGV-0075208_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0075208_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075208_41	UniRef90	UniRef90_UPI00189D7AB4	helix-turn-helix domain-containing protein	NA
UHGV-0075208_41	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0075208_41	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0075208_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075208_41	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0075208_42	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0075208_42	UniRef90	UniRef90_UPI00189ED8FE	helix-turn-helix domain-containing protein	NA
UHGV-0075208_42	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0075208_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0075208_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075208_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0075208_43	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0075208_43	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0075208_43	UniRef90	UniRef90_UPI0018A10D95	3'-5' exonuclease	NA
UHGV-0075208_43	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0075208_43	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0075208_43	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0075208_43	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0075208_43	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0075208_44	KOfam	K14059	int; integrase	NA
UHGV-0075208_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0075208_44	UniRef90	UniRef90_UPI00189E922D	site-specific integrase	NA
UHGV-0075208_44	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0075208_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075208_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075208_44	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA