UHGV-0075337

Genome information

Genome length 44,586 bps

CDS count 67

Completeness 99.12% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075337
vOTU ID	vOTU-064743
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_105579
BioSample	SAMEA2452123
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.79
Jumbo phage	No

Genome content
Genome length	44,586 bps
GC content	40.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.37%
Average CDS length	617.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075337_1	KOfam	K14059	int; integrase	NA
UHGV-0075337_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0075337_1	UniRef90	UniRef90_E2NUB3	Site-specific recombinase, phage integrase family	NA
UHGV-0075337_1	eggNOG-mapper	1504823.CCMM01000008_gene1083	DNA integration	NA
UHGV-0075337_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075337_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0075337_2	UniRef90	UniRef90_A0A3C1N2P3	HTH cro/C1-type domain-containing protein	NA
UHGV-0075337_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075337_4	UniRef90	UniRef90_A0A417IKZ6	DNA-binding protein	NA
UHGV-0075337_4	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0075337_6	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-0075337_6	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-0075337_6	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0075337_6	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0075337_7	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0075337_7	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0075337_7	UniRef90	UniRef90_D7GXC3	DNA or RNA helicases of superfamily II	NA
UHGV-0075337_7	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-0075337_7	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0075337_7	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0075337_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0075337_7	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0075337_7	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0075337_8	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0075337_8	UniRef90	UniRef90_UPI00164E7D72	sugar-phospahte nucleotidyltransferase	NA
UHGV-0075337_8	eggNOG-mapper	1235797.C816_04032	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0075337_8	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-0075337_8	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0075337_8	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0075337_9	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0075337_9	UniRef90	UniRef90_D7GXC4	DNA polymerase elongation subunit (Family B)	NA
UHGV-0075337_9	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0075337_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0075337_9	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0075337_9	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0075337_10	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0075337_10	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-0075337_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075337_11	UniRef90	UniRef90_D7GXC5	Phage-related protein, predicted endonuclease	NA
UHGV-0075337_11	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-0075337_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0075337_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0075337_11	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0075337_12	Structural annotation	PF05037	NA	NA
UHGV-0075337_13	PHROG	phrog_236	nucleotide kinase	other
UHGV-0075337_13	UniRef90	UniRef90_A0A8D9PGN7	Nucelotide kinase	NA
UHGV-0075337_13	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-0075337_13	Pfam	PF11753	NA	DUF3310
UHGV-0075337_13	Structural annotation	PF11753	NA	NA
UHGV-0075337_16	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0075337_17	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0075337_17	UniRef90	UniRef90_A0A1C0AE21	DNA primase	NA
UHGV-0075337_17	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0075337_17	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0075337_17	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0075337_17	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0075337_18	PHROG	phrog_7024	NA	unknown function
UHGV-0075337_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0075337_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0075337_21	UniRef90	UniRef90_A0A843HLZ2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0075337_21	eggNOG-mapper	1410650.JHWL01000037_gene595	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0075337_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0075337_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0075337_21	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0075337_22	PHROG	phrog_22292	NA	unknown function
UHGV-0075337_22	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-0075337_23	PHROG	phrog_22292	NA	unknown function
UHGV-0075337_23	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-0075337_24	PHROG	phrog_3878	NA	unknown function
UHGV-0075337_27	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0075337_27	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0075337_27	UniRef90	UniRef90_A0A1C5MWG4	mRNA interferase MazF4	NA
UHGV-0075337_27	eggNOG-mapper	411459.RUMOBE_01744	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0075337_27	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0075337_27	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0075337_27	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0075337_28	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0075337_28	UniRef90	UniRef90_D7GNU9	Phage/plasmid primase, P4 family, C-terminal domain	NA
UHGV-0075337_28	eggNOG-mapper	431943.CKL_3236	Phage plasmid primase, P4 family	NA
UHGV-0075337_28	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0075337_28	Pfam	PF19263	NA	DUF5906
UHGV-0075337_28	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0075337_28	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0075337_28	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0075337_28	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0075337_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0075337_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0075337_29	UniRef90	UniRef90_UPI000408AAB9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075337_29	eggNOG-mapper	1122173.AXVL01000060_gene390	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0075337_29	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0075337_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0075337_29	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075337_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0075337_29	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0075337_35	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0075337_38	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0075337_39	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0075337_40	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0075337_40	PHROG	phrog_95	integrase	integration and excision
UHGV-0075337_40	UniRef90	UniRef90_A0A1C5MXG4	Transposon Tn3 resolvase	NA
UHGV-0075337_40	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0075337_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0075337_40	Pfam	PF07508	Recombinase	Recombinase
UHGV-0075337_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0075337_40	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0075337_41	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0075337_41	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0075337_41	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0075337_41	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0075337_41	COG	COG5410	NA	NA
UHGV-0075337_41	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0075337_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0075337_42	UniRef90	UniRef90_A0A1C5MXM2	Phage portal protein, SPP1 family	NA
UHGV-0075337_42	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0075337_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0075337_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0075337_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075337_44	UniRef90	UniRef90_S4UA78	HNH homing endonuclease	NA
UHGV-0075337_44	eggNOG-mapper	1173745.A0A059TA03_9CAUD	HNH endonuclease	NA
UHGV-0075337_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0075337_44	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0075337_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0075337_44	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0075337_45	PHROG	phrog_544	major head protein	head and packaging
UHGV-0075337_45	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0075337_45	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0075337_45	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0075337_46	UniRef90	UniRef90_D7GNV9	Phage QLRG family, putative DNA packaging	NA
UHGV-0075337_46	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0075337_46	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0075337_46	Structural annotation	TIGR01560	NA	NA
UHGV-0075337_47	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0075337_48	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0075337_49	eggNOG-mapper	1121333.JMLH01000047_gene1014	NA	NA
UHGV-0075337_49	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0075337_50	PHROG	phrog_158	major tail protein	tail
UHGV-0075337_50	UniRef90	UniRef90_D7GNW1	Phage tail protein	NA
UHGV-0075337_50	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-0075337_50	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0075337_51	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0075337_51	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0075337_51	Pfam	PF16478	NA	DUF5055
UHGV-0075337_51	Structural annotation	PF16478	NA	NA
UHGV-0075337_52	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0075337_53	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0075337_53	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-0075337_53	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0075337_53	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0075337_54	PHROG	phrog_1194	NA	unknown function
UHGV-0075337_54	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0075337_54	Pfam	PF20458	NA	DUF6711
UHGV-0075337_54	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0075337_55	PHROG	phrog_13879	NA	unknown function
UHGV-0075337_55	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0075337_55	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0075337_56	PHROG	phrog_18725	NA	unknown function
UHGV-0075337_56	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0075337_57	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-0075337_59	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0075337_59	Structural annotation	PF10651	NA	NA
UHGV-0075337_60	Structural annotation	PF10807, MF_01372, NF007541	NA	NA
UHGV-0075337_64	PHROG	phrog_1382	NA	unknown function
UHGV-0075337_64	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0075337_64	Structural annotation	NF040910	NA	NA
UHGV-0075337_65	eggNOG-mapper	1211844.CBLM010000023_gene975	NA	NA
UHGV-0075337_66	PHROG	phrog_33625	holin	lysis
UHGV-0075337_66	UniRef90	UniRef90_A0A6N3AF02	Bacteriophage holin	NA
UHGV-0075337_66	eggNOG-mapper	665959.HMPREF1013_00186	Bacteriophage holin	NA
UHGV-0075337_66	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0075337_66	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0075337_66	COG	COG5546	NA	NA
UHGV-0075337_66	Structural annotation	COG5546	NA	NA
UHGV-0075337_67	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0075337_67	PHROG	phrog_435	endolysin	lysis
UHGV-0075337_67	UniRef90	UniRef90_B0G4K0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075337_67	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075337_67	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0075337_67	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0075337_67	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075337_67	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA