UHGV-0075341

Genome information

vOTU vOTU-019914

Genome length 37,748 bps

CDS count 51

Completeness 83.09% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075341
vOTU ID	vOTU-019914
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120531
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.97
Jumbo phage	No

Genome content
Genome length	37,748 bps
GC content	50.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	88.30%
Average CDS length	656.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075341_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0075341_1	UniRef90	UniRef90_A0A1M6MXK4	Phage-related protein	NA
UHGV-0075341_1	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0075341_1	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0075341_1	Structural annotation	PF20155, TIGR01760	NA	NA
UHGV-0075341_2	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0075341_3	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0075341_3	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0075341_3	Pfam	PF16478	NA	DUF5055
UHGV-0075341_3	Structural annotation	PF16478	NA	NA
UHGV-0075341_4	PHROG	phrog_158	major tail protein	tail
UHGV-0075341_4	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0075341_4	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0075341_4	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0075341_4	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0075341_5	eggNOG-mapper	1121333.JMLH01000047_gene1014	NA	NA
UHGV-0075341_5	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0075341_6	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0075341_6	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0075341_7	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0075341_8	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0075341_8	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0075341_8	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0075341_8	Structural annotation	TIGR01560	NA	NA
UHGV-0075341_9	PHROG	phrog_544	major head protein	head and packaging
UHGV-0075341_9	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0075341_9	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0075341_9	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0075341_10	Structural annotation	PF06810	NA	NA
UHGV-0075341_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-0075341_11	UniRef90	UniRef90_R6P563	SPP1 family phage portal protein	NA
UHGV-0075341_11	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0075341_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0075341_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0075341_12	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0075341_12	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0075341_12	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0075341_12	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0075341_12	COG	COG5410	NA	NA
UHGV-0075341_12	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0075341_13	PHROG	phrog_888	NA	unknown function
UHGV-0075341_14	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0075341_14	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0075341_14	UniRef90	UniRef90_R6N9Q2	Resolvase	NA
UHGV-0075341_14	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-0075341_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0075341_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0075341_14	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0075341_15	UniRef90	UniRef90_R6P559	DNA-binding helix-turn-helix protein	NA
UHGV-0075341_15	eggNOG-mapper	397287.C807_00334	NA	NA
UHGV-0075341_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075341_15	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0075341_19	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0075341_19	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0075341_19	Structural annotation	PF16677	NA	NA
UHGV-0075341_22	eggNOG-mapper	665950.HMPREF1025_01402	NA	NA
UHGV-0075341_23	PHROG	phrog_28782	NA	unknown function
UHGV-0075341_23	UniRef90	UniRef90_UPI0018774E0E	reductase	NA
UHGV-0075341_23	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0075341_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0075341_24	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0075341_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0075341_25	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0075341_25	UniRef90	UniRef90_R6NFT7	Phage/plasmid primase P4 family C-terminal domain	NA
UHGV-0075341_25	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0075341_25	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0075341_25	Pfam	PF19263	NA	DUF5906
UHGV-0075341_25	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0075341_25	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0075341_25	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0075341_25	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0075341_27	UniRef90	UniRef90_G3MA20	Gp279	NA
UHGV-0075341_28	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0075341_28	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0075341_28	UniRef90	UniRef90_R6MZ76	Flavin-dependent thymidylate synthase	NA
UHGV-0075341_28	eggNOG-mapper	665956.HMPREF1032_03153	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0075341_28	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0075341_28	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0075341_28	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0075341_28	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0075341_28	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0075341_29	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0075341_29	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0075341_29	UniRef90	UniRef90_A0A1C6L030	mRNA interferase EndoA	NA
UHGV-0075341_29	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0075341_29	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0075341_29	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0075341_29	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0075341_30	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0075341_30	UniRef90	UniRef90_R6P545	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase N-terminal	NA
UHGV-0075341_30	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0075341_30	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0075341_30	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0075341_30	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0075341_31	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0075341_34	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0075341_34	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0075341_34	UniRef90	UniRef90_A0A1C6EYG8	Predicted HD-superfamily hydrolase	NA
UHGV-0075341_34	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0075341_34	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0075341_34	Structural annotation	PF21447, MF_01427, NF010007, COG3481	NA	NA
UHGV-0075341_35	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0075341_35	UniRef90	UniRef90_R6MZ55	NA	NA
UHGV-0075341_35	eggNOG-mapper	553217.ENHAE0001_2201	NA	NA
UHGV-0075341_35	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0075341_35	Structural annotation	PF18909	NA	NA
UHGV-0075341_36	Structural annotation	PF05037	NA	NA
UHGV-0075341_37	AcrCatalog	cluster_73853	NA	NA
UHGV-0075341_39	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075341_39	UniRef90	UniRef90_R6N9M4	Phage-related protein predicted endonuclease	NA
UHGV-0075341_39	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-0075341_39	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0075341_39	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0075341_39	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0075341_40	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0075341_40	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0075341_40	UniRef90	UniRef90_A0A849CVC4	DNA polymerase elongation subunit (Family B)	NA
UHGV-0075341_40	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0075341_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0075341_40	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0075341_40	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0075341_41	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0075341_41	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0075341_41	UniRef90	UniRef90_A0A849CVE0	DEAD/DEAH box helicase family protein	NA
UHGV-0075341_41	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-0075341_41	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0075341_41	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0075341_41	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0075341_41	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0075341_41	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0075341_42	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0075341_42	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-0075341_42	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-0075341_42	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0075341_43	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0075341_43	PHROG	phrog_19349	NA	unknown function
UHGV-0075341_43	UniRef90	UniRef90_R6N9M0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	NA
UHGV-0075341_43	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-0075341_43	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0075341_43	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0075341_43	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0075341_45	UniRef90	UniRef90_A0A1C6L0N4	HTH cro/C1-type domain-containing protein	NA
UHGV-0075341_45	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0075341_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0075341_46	PHROG	phrog_95	integrase	integration and excision
UHGV-0075341_46	UniRef90	UniRef90_R6N1X8	DNA integration/recombination protein	NA
UHGV-0075341_46	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0075341_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0075341_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-0075341_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0075341_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0075341_46	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0075341_47	eggNOG-mapper	1123263.AUKY01000091_gene638	Transposon-encoded protein TnpV	NA
UHGV-0075341_48	UniRef90	UniRef90_A0A0D6DVD5	Phage integrase family protein	NA
UHGV-0075341_48	eggNOG-mapper	180332.JTGN01000005_gene3035	Belongs to the 'phage' integrase family	NA
UHGV-0075341_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075341_49	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-0075341_49	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0075341_49	UniRef90	UniRef90_A0A1Y4NH71	Transcriptional regulator	NA
UHGV-0075341_49	eggNOG-mapper	158190.SpiGrapes_0576	NA	NA
UHGV-0075341_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0075341_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0075341_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075341_49	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0075341_50	PHROG	phrog_26280	NA	unknown function
UHGV-0075341_50	UniRef90	UniRef90_UPI000360611B	NA	NA
UHGV-0075341_50	eggNOG-mapper	485916.Dtox_2225	NA	NA
UHGV-0075341_50	Pfam	PF19448	NA	DUF5986
UHGV-0075341_51	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA