UHGV-0075360

Genome information

Genome length 33,734 bps

CDS count 55

Completeness 79.31% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075360
vOTU ID	vOTU-022829
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_118555
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.07
Jumbo phage	No

Genome content
Genome length	33,734 bps
GC content	33.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.52%
Average CDS length	564.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075360_2	eggNOG-mapper	568816.Acin_1213	NA	NA
UHGV-0075360_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0075360_5	PHROG	phrog_435	endolysin	lysis
UHGV-0075360_5	UniRef90	UniRef90_H3K6Q0	MurNAc-LAA domain-containing protein	NA
UHGV-0075360_5	eggNOG-mapper	591001.Acfer_1125	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075360_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0075360_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075360_5	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0075360_6	eggNOG-mapper	1273103.NM10_01736	NA	NA
UHGV-0075360_7	PHROG	phrog_4105	NA	unknown function
UHGV-0075360_7	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0075360_8	KOfam	K14059	int; integrase	NA
UHGV-0075360_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0075360_8	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-0075360_8	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0075360_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075360_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075360_8	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0075360_10	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-0075360_12	PHROG	phrog_18608	NA	unknown function
UHGV-0075360_12	eggNOG-mapper	1122917.KB899673_gene660	NA	NA
UHGV-0075360_12	Structural annotation	PF18463, NF012201	NA	NA
UHGV-0075360_13	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-0075360_13	Structural annotation	PF12571	NA	NA
UHGV-0075360_14	PHROG	phrog_521	tail protein	tail
UHGV-0075360_14	UniRef90	UniRef90_UPI0019596FF9	NA	NA
UHGV-0075360_14	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0075360_14	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0075360_14	COG	COG3778	NA	NA
UHGV-0075360_14	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0075360_15	PHROG	phrog_6	baseplate protein	tail
UHGV-0075360_15	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0075360_15	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0075360_15	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0075360_15	COG	COG3299	NA	NA
UHGV-0075360_15	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0075360_16	PHROG	phrog_120	baseplate protein	tail
UHGV-0075360_16	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0075360_16	eggNOG-mapper	1123250.KB908414_gene2117	NA	NA
UHGV-0075360_16	Pfam	PF10934	NA	DUF2634
UHGV-0075360_16	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0075360_17	PHROG	phrog_579	NA	unknown function
UHGV-0075360_17	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0075360_17	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0075360_17	Pfam	PF10844	NA	DUF2577
UHGV-0075360_17	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0075360_18	PHROG	phrog_400	tail protein	tail
UHGV-0075360_18	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0075360_18	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0075360_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0075360_18	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0075360_19	PHROG	phrog_380	endolysin	lysis
UHGV-0075360_19	UniRef90	UniRef90_UPI001CF423A1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0075360_19	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0075360_19	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0075360_19	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0075360_20	PHROG	phrog_16692	NA	unknown function
UHGV-0075360_20	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0075360_20	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0075360_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0075360_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0075360_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0075360_20	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0075360_22	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0075360_22	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0075360_22	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0075360_22	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0075360_22	Structural annotation	PF08890	NA	NA
UHGV-0075360_23	PHROG	phrog_365	tail protein	tail
UHGV-0075360_23	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0075360_23	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0075360_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0075360_23	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0075360_24	PHROG	phrog_1480	tail sheath	tail
UHGV-0075360_24	UniRef90	UniRef90_H3K5C1	Phage_sheath_1C domain-containing protein	NA
UHGV-0075360_24	eggNOG-mapper	1123250.KB908414_gene2110	Phage tail sheath C-terminal domain	NA
UHGV-0075360_24	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0075360_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0075360_24	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0075360_25	PHROG	phrog_525	NA	unknown function
UHGV-0075360_25	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0075360_25	Pfam	PF20765	NA	DUF6838
UHGV-0075360_25	Structural annotation	PF20765	NA	NA
UHGV-0075360_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0075360_26	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0075360_26	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0075360_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0075360_26	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0075360_27	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0075360_27	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0075360_27	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0075360_28	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0075360_28	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0075360_29	PHROG	phrog_3220	NA	unknown function
UHGV-0075360_29	UniRef90	UniRef90_UPI001966F702	NA	NA
UHGV-0075360_29	eggNOG-mapper	203119.Cthe_1147	NA	NA
UHGV-0075360_29	Pfam	PF09954	NA	DUF2188
UHGV-0075360_29	Structural annotation	PF09954	NA	NA
UHGV-0075360_30	eggNOG-mapper	1031288.AXAA01000044_gene1977	NA	NA
UHGV-0075360_32	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0075360_32	UniRef90	UniRef90_A0A378NSX8	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0075360_32	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0075360_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0075360_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0075360_32	COG	COG2369	NA	NA
UHGV-0075360_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0075360_33	PHROG	phrog_247	major head protein	head and packaging
UHGV-0075360_33	UniRef90	UniRef90_UPI001D00946D	major capsid protein	NA
UHGV-0075360_33	eggNOG-mapper	568816.Acin_1382	NA	NA
UHGV-0075360_33	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0075360_33	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0075360_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0075360_34	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0075360_34	eggNOG-mapper	1111454.HMPREF1250_0184	Phage minor structural protein GP20	NA
UHGV-0075360_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0075360_34	Structural annotation	PF06810	NA	NA
UHGV-0075360_35	KOfam	K24218	C1QTNF7; complement C1q and tumor necrosis factor-related protein 7	NA
UHGV-0075360_35	PHROG	phrog_26303	NA	unknown function
UHGV-0075360_35	UniRef90	UniRef90_A0A378NUD0	Collagen triple helix repeat (20 copies)	NA
UHGV-0075360_35	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0075360_35	COG	COG5295	Autotransporter adhesin	NA
UHGV-0075360_36	PHROG	phrog_29127	NA	unknown function
UHGV-0075360_36	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0075360_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0075360_37	UniRef90	UniRef90_A0A378NUY6	Phage portal protein, SPP1 family	NA
UHGV-0075360_37	eggNOG-mapper	1111454.HMPREF1250_0182	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0075360_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0075360_37	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0075360_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0075360_38	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0075360_38	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0075360_38	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0075360_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0075360_38	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0075360_38	COG	COG5410	NA	NA
UHGV-0075360_38	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0075360_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0075360_39	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0075360_39	UniRef90	UniRef90_A0A378NSZ3	Terminase small subunit	NA
UHGV-0075360_39	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0075360_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0075360_39	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0075360_39	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0075360_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0075360_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0075360_40	UniRef90	UniRef90_A0A4P6LTT4	Bro-N domain-containing protein	NA
UHGV-0075360_40	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0075360_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0075360_40	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0075360_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0075360_40	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0075360_41	UniRef90	UniRef90_A0A416W571	Ribbon-helix-helix protein, CopG family	NA
UHGV-0075360_41	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-0075360_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0075360_42	UniRef90	UniRef90_UPI00195CFC41	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0075360_42	eggNOG-mapper	1392501.JIAC01000001_gene1511	sigma factor activity	NA
UHGV-0075360_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0075360_42	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0075360_46	PHROG	phrog_8684	NA	unknown function
UHGV-0075360_46	UniRef90	UniRef90_H3K6U3	YopX domain-containing protein	NA
UHGV-0075360_46	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0075360_46	Pfam	PF09643	YopX protein	YopX
UHGV-0075360_47	eggNOG-mapper	742738.HMPREF9460_01904	NA	NA
UHGV-0075360_49	UniRef90	UniRef90_I0GS13	Putative RusA family protein	NA
UHGV-0075360_49	eggNOG-mapper	1280706.AUJE01000003_gene2276	Endodeoxyribonuclease RusA	NA
UHGV-0075360_49	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0075360_50	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0075360_50	UniRef90	UniRef90_H3K6U8	NA	NA
UHGV-0075360_50	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0075360_50	Pfam	PF12961	NA	DUF3850
UHGV-0075360_54	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0075360_54	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0075360_54	UniRef90	UniRef90_H3K6V2	IstB_IS21 domain-containing protein	NA
UHGV-0075360_54	eggNOG-mapper	1280706.AUJE01000003_gene2277	DNA-dependent DNA replication	NA
UHGV-0075360_54	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0075360_54	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0075360_54	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0075360_55	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0075360_55	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0075360_55	UniRef90	UniRef90_H3K6V3	DnaD and phage-associated domain-containing protein	NA
UHGV-0075360_55	eggNOG-mapper	936573.HMPREF1147_1306	DnaD domain protein	NA
UHGV-0075360_55	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0075360_55	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0075360_55	COG	COG3935	DNA replication protein DnaD	NA