UHGV-0075426

Genome information

Genome length 24,627 bps

CDS count 31

Completeness 65.68% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075426
vOTU ID	vOTU-025475
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_124826
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.88
Jumbo phage	No

Genome content
Genome length	24,627 bps
GC content	50.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	90.40%
Average CDS length	721.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075426_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0075426_1	PHROG	phrog_7	endolysin	lysis
UHGV-0075426_1	UniRef90	UniRef90_A0A2A5MIQ5	Lysozyme	NA
UHGV-0075426_1	eggNOG-mapper	90371.CY43_05255	Phage lysozyme	NA
UHGV-0075426_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0075426_1	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0075426_2	PHROG	phrog_8494	NA	unknown function
UHGV-0075426_2	eggNOG-mapper	279714.FuraDRAFT_2438	NA	NA
UHGV-0075426_3	PHROG	phrog_20061	NA	unknown function
UHGV-0075426_4	PHROG	phrog_717	NA	unknown function
UHGV-0075426_4	eggNOG-mapper	911008.GLAD_04124	NA	NA
UHGV-0075426_4	dbAPIS	APIS002	Vs.4 antagonized cGAS signaling by binding tightly to cGAMP (dissociation constant of approximately 30 nM) and sequestering it; Bioinformatic analyses identified 198 homologues of Vs.4 in diverse phages; belongs to PHROG 717.	NA
UHGV-0075426_5	PHROG	phrog_571	NA	unknown function
UHGV-0075426_5	UniRef90	UniRef90_A0A0C7EYH0	NA	NA
UHGV-0075426_5	eggNOG-mapper	1028307.EAE_21105	NA	NA
UHGV-0075426_5	Pfam	PF10834	NA	DUF2560
UHGV-0075426_5	Structural annotation	PF10834	NA	NA
UHGV-0075426_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0075426_7	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075426_7	UniRef90	UniRef90_A0A377Z6P6	DNAse	NA
UHGV-0075426_7	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0075426_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0075426_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0075426_7	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0075426_8	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0075426_8	UniRef90	UniRef90_A0A859X1P8	Phage terminase small subunit P27 family	NA
UHGV-0075426_8	eggNOG-mapper	175950.Q8HAD7_9CAUD	Phage terminase, small subunit	NA
UHGV-0075426_8	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0075426_8	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0075426_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0075426_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0075426_9	UniRef90	UniRef90_A0A210UY68	Terminase large subunit	NA
UHGV-0075426_9	eggNOG-mapper	640513.Entas_3082	Phage Terminase	NA
UHGV-0075426_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0075426_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0075426_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0075426_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0075426_10	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0075426_10	eggNOG-mapper	1440052.EAKF1_ch0465c	NA	NA
UHGV-0075426_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0075426_11	UniRef90	UniRef90_A0A237PU11	Phage portal protein	NA
UHGV-0075426_11	eggNOG-mapper	640513.Entas_3080	TIGRFAM Phage portal protein, HK97	NA
UHGV-0075426_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0075426_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0075426_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0075426_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0075426_12	KOfam	K06904	NA	NA
UHGV-0075426_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0075426_12	UniRef90	UniRef90_UPI00129CC7C8	HK97 family phage prohead protease	NA
UHGV-0075426_12	eggNOG-mapper	640513.Entas_3079	Caudovirus prohead serine protease	NA
UHGV-0075426_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0075426_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0075426_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0075426_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0075426_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0075426_13	UniRef90	UniRef90_E6WKD7	Phage major capsid protein, HK97 family	NA
UHGV-0075426_13	eggNOG-mapper	640513.Entas_3078	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0075426_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0075426_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0075426_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0075426_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0075426_14	PHROG	phrog_21989	NA	unknown function
UHGV-0075426_14	UniRef90	UniRef90_Q8HAD1	Sb7	NA
UHGV-0075426_14	eggNOG-mapper	1216966.BAUC01000041_gene2872	NA	NA
UHGV-0075426_15	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0075426_15	UniRef90	UniRef90_A0A859X296	Phage gp6-like head-tail connector protein	NA
UHGV-0075426_15	eggNOG-mapper	640513.Entas_3076	Phage gp6-like head-tail connector protein	NA
UHGV-0075426_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0075426_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0075426_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0075426_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0075426_16	UniRef90	UniRef90_A0A170RNN6	Head-tail adaptor protein	NA
UHGV-0075426_16	eggNOG-mapper	573.JG24_11005	head-tail adaptor	NA
UHGV-0075426_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0075426_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0075426_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0075426_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0075426_17	PHROG	phrog_23409	NA	unknown function
UHGV-0075426_17	UniRef90	UniRef90_UPI0007CBB79D	HK97 gp10 family phage protein	NA
UHGV-0075426_17	eggNOG-mapper	573.JG24_11010	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0075426_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0075426_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0075426_17	Structural annotation	TIGR01725	NA	NA
UHGV-0075426_18	PHROG	phrog_347	tail terminator	connector
UHGV-0075426_18	UniRef90	UniRef90_UPI0012B9FC5B	NA	NA
UHGV-0075426_18	eggNOG-mapper	573.JG24_11015	Structural component (Phage or Prophage Related)	NA
UHGV-0075426_18	Pfam	PF11367	NA	DUF3168
UHGV-0075426_18	Structural annotation	PF11367	NA	NA
UHGV-0075426_19	PHROG	phrog_158	major tail protein	tail
UHGV-0075426_19	UniRef90	UniRef90_A0A4P1AST2	Ig-like domain-containing protein	NA
UHGV-0075426_19	eggNOG-mapper	573.JG24_11020	NA	NA
UHGV-0075426_19	Pfam	PF13895	Immunoglobulin domain	Ig_2
UHGV-0075426_19	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-0075426_20	PHROG	phrog_14766	tail protein	tail
UHGV-0075426_20	UniRef90	UniRef90_UPI001C6080A8	phage tail assembly chaperone	NA
UHGV-0075426_20	eggNOG-mapper	571.MC52_01365	tail assembly chaperone	NA
UHGV-0075426_20	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0075426_20	Structural annotation	PF06222	NA	NA
UHGV-0075426_21	PHROG	phrog_14766	tail protein	tail
UHGV-0075426_21	UniRef90	UniRef90_UPI000D741DFE	NA	NA
UHGV-0075426_21	eggNOG-mapper	573.JG24_11030	NA	NA
UHGV-0075426_21	Pfam	PF13227	NA	DUF4035
UHGV-0075426_21	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0075426_22	PHROG	phrog_2320	NA	unknown function
UHGV-0075426_22	UniRef90	UniRef90_UPI000665BF89	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0075426_22	eggNOG-mapper	1005994.GTGU_04485	NA	NA
UHGV-0075426_22	Structural annotation	PF12274	NA	NA
UHGV-0075426_23	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0075426_23	UniRef90	UniRef90_UPI0018ABD84B	phage tail tape measure protein	NA
UHGV-0075426_23	eggNOG-mapper	573.JG24_11040	tape measure protein	NA
UHGV-0075426_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0075426_23	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0075426_23	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0075426_23	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0075426_23	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0075426_23	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0075426_24	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0075426_24	UniRef90	UniRef90_A0A163VZJ0	Membrane protein	NA
UHGV-0075426_24	eggNOG-mapper	571.MC52_01345	NA	NA
UHGV-0075426_24	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0075426_25	PHROG	phrog_396	minor tail protein	tail
UHGV-0075426_25	UniRef90	UniRef90_A0A168QM81	ArsR family transcriptional regulator	NA
UHGV-0075426_25	eggNOG-mapper	571.MC52_01340	NA	NA
UHGV-0075426_25	Pfam	PF08875	NA	DUF1833
UHGV-0075426_25	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0075426_26	PHROG	phrog_469	tail protein	tail
UHGV-0075426_26	UniRef90	UniRef90_A0A2J4VCS0	Kinase	NA
UHGV-0075426_26	eggNOG-mapper	573.JG24_11060	cellulase activity	NA
UHGV-0075426_26	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0075426_26	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0075426_26	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0075426_26	Structural annotation	PF13550, NF040662, TIGR01683, COG4733, COG2104	NA	NA
UHGV-0075426_27	PHROG	phrog_4201	tail fiber protein	tail
UHGV-0075426_27	UniRef90	UniRef90_A0A660GA41	SASA domain-containing protein	NA
UHGV-0075426_27	eggNOG-mapper	595536.ADVE02000001_gene3183	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0075426_27	Pfam	PF13753	Putative flagellar system-associated repeat	SWM_repeat
UHGV-0075426_27	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0075426_27	Structural annotation	PF03629, PF13753, TIGR02059, COG2755	NA	NA
UHGV-0075426_28	PHROG	phrog_4390	NA	unknown function
UHGV-0075426_30	PHROG	phrog_3893	NA	unknown function
UHGV-0075426_30	UniRef90	UniRef90_A0A8F8HLX0	DNA polymerase V	NA
UHGV-0075426_30	eggNOG-mapper	571.MC52_18365	NA	NA
UHGV-0075426_30	Structural annotation	PF01475	NA	NA
UHGV-0075426_31	PHROG	phrog_3469	UmuD-like protein	DNA, RNA and nucleotide metabolism
UHGV-0075426_31	UniRef90	UniRef90_A0A377ZXH3	Error-prone repair protein UmuD	NA
UHGV-0075426_31	eggNOG-mapper	35703.DQ02_13950	NA	NA
UHGV-0075426_31	Structural annotation	PF16452, MF_00015, NF007621, COG1974	NA	NA