UHGV-0075430

Genome information

Genome length 42,025 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075430
vOTU ID	vOTU-003479
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_124814
BioSample	SAMEA2737720
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.01
Jumbo phage	No

Genome content
Genome length	42,025 bps
GC content	56.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.13%
Average CDS length	678.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075430_1	PHROG	phrog_22978	NA	unknown function
UHGV-0075430_1	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0075430_2	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0075430_2	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0075430_4	PHROG	phrog_22984	NA	unknown function
UHGV-0075430_5	PHROG	phrog_16490	NA	unknown function
UHGV-0075430_5	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0075430_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0075430_7	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0075430_8	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0075430_8	PHROG	phrog_95	integrase	integration and excision
UHGV-0075430_8	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0075430_8	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0075430_8	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0075430_8	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0075430_8	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0075430_8	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0075430_9	UniRef90	UniRef90_A7VNR4	HTH cro/C1-type domain-containing protein	NA
UHGV-0075430_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075430_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075430_9	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0075430_10	Structural annotation	PF10754	NA	NA
UHGV-0075430_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075430_11	UniRef90	UniRef90_A0A845R7R6	XRE family transcriptional regulator	NA
UHGV-0075430_11	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0075430_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0075430_11	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0075430_11	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0075430_14	UniRef90	UniRef90_A0A7X9BRV4	Helix-turn-helix transcriptional regulator	NA
UHGV-0075430_14	eggNOG-mapper	411473.RUMCAL_01355	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0075430_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075430_14	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0075430_19	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0075430_19	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0075430_19	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0075430_19	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0075430_19	Structural annotation	PF05565	NA	NA
UHGV-0075430_20	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0075430_20	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0075430_20	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0075430_20	Pfam	PF04404	ERF superfamily	ERF
UHGV-0075430_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0075430_20	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0075430_21	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0075430_21	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0075430_21	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0075430_21	Structural annotation	PF05772	NA	NA
UHGV-0075430_22	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075430_22	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-0075430_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0075430_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0075430_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0075430_23	UniRef90	UniRef90_A0A1Q6RGI0	Single-stranded DNA-binding protein	NA
UHGV-0075430_23	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0075430_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0075430_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0075430_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0075430_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0075430_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0075430_24	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0075430_24	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0075430_24	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0075430_24	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0075430_26	Structural annotation	PF21485	NA	NA
UHGV-0075430_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0075430_28	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0075430_28	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0075430_28	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0075430_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0075430_30	PHROG	phrog_474	phosphofructokinase	other
UHGV-0075430_30	UniRef90	UniRef90_A0A1Q6KPW7	NA	NA
UHGV-0075430_30	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0075430_30	Pfam	PF19905	NA	DUF6378
UHGV-0075430_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0075430_31	PHROG	phrog_17284	NA	unknown function
UHGV-0075430_31	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075430_31	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0075430_31	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0075430_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0075430_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0075430_31	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0075430_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0075430_33	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0075430_33	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0075430_35	PHROG	phrog_22543	NA	unknown function
UHGV-0075430_35	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0075430_38	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0075430_38	UniRef90	UniRef90_UPI00164DE10C	helix-turn-helix domain-containing protein	NA
UHGV-0075430_38	eggNOG-mapper	1301100.HG529387_gene5110	Putative sugar diacid recognition	NA
UHGV-0075430_38	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0075430_38	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0075430_38	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0075430_39	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0075430_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0075430_40	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-0075430_40	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0075430_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075430_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075430_41	PHROG	phrog_872	NA	unknown function
UHGV-0075430_41	UniRef90	UniRef90_A0A8J6M9F5	NA	NA
UHGV-0075430_41	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0075430_41	Pfam	PF11195	NA	DUF2829
UHGV-0075430_41	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0075430_41	Structural annotation	PF11195	NA	NA
UHGV-0075430_42	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0075430_42	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0075430_42	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0075430_42	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0075430_42	Structural annotation	PF16677	NA	NA
UHGV-0075430_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075430_43	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0075430_43	UniRef90	UniRef90_UPI001BB47C17	terminase family protein	NA
UHGV-0075430_43	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0075430_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0075430_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075430_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0075430_44	PHROG	phrog_156	portal protein	head and packaging
UHGV-0075430_44	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0075430_44	eggNOG-mapper	748224.HMPREF9436_02547	NA	NA
UHGV-0075430_44	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0075430_45	KOfam	K07584	NA	NA
UHGV-0075430_45	PHROG	phrog_4478	peptidase	other
UHGV-0075430_45	UniRef90	UniRef90_A0A7C6RDV5	Ribosomal-processing cysteine protease Prp	NA
UHGV-0075430_45	eggNOG-mapper	273068.TTE0914	Cysteine protease Prp	NA
UHGV-0075430_45	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0075430_45	COG	COG2868	NA	NA
UHGV-0075430_45	Structural annotation	PF04327, NF011125, COG2868	NA	NA
UHGV-0075430_46	PHROG	phrog_13908	NA	unknown function
UHGV-0075430_46	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0075430_47	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0075430_47	UniRef90	UniRef90_UPI001D02EBA7	N4-gp56 family major capsid protein	NA
UHGV-0075430_47	eggNOG-mapper	1203606.HMPREF1526_02746	NA	NA
UHGV-0075430_47	Pfam	PF13252	NA	DUF4043
UHGV-0075430_47	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0075430_47	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0075430_49	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0075430_49	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0075430_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0075430_49	Structural annotation	PF10651	NA	NA
UHGV-0075430_50	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0075430_50	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0075430_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0075430_52	PHROG	phrog_199	holin	lysis
UHGV-0075430_52	UniRef90	UniRef90_K1UL76	Holin, toxin secretion/phage lysis	NA
UHGV-0075430_52	eggNOG-mapper	411467.BACCAP_00280	Bacteriophage holin family	NA
UHGV-0075430_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0075430_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0075430_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0075430_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0075430_53	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0075430_53	PHROG	phrog_18955	NA	unknown function
UHGV-0075430_53	UniRef90	UniRef90_UPI001C035E39	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0075430_53	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0075430_53	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0075430_53	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0075430_53	COG	COG3108	NA	NA
UHGV-0075430_53	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-0075430_54	PHROG	phrog_12105	NA	unknown function
UHGV-0075430_54	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0075430_55	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0075430_55	UniRef90	UniRef90_A0A8D9UH72	Stabilization protein (Fragment)	NA
UHGV-0075430_55	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0075430_55	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0075430_56	Pfam	PF07889	NA	DUF1664
UHGV-0075430_57	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-0075430_58	PHROG	phrog_22978	NA	unknown function
UHGV-0075430_58	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0075430_58	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0075430_58	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5