UHGV-0075455

Genome information

Genome length 33,017 bps

CDS count 49

Completeness 99.36% (high-quality)

geNomad score 0.9635

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075455
vOTU ID	vOTU-014126
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_112060
BioSample	SAMEA2580122
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9635
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.51
Jumbo phage	No

Genome content
Genome length	33,017 bps
GC content	32.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.13%
Average CDS length	642.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075455_1	KOfam	K14059	int; integrase	NA
UHGV-0075455_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0075455_1	UniRef90	UniRef90_UPI0011DD4C1D	site-specific integrase	NA
UHGV-0075455_1	eggNOG-mapper	1033744.CAEL01000029_gene1311	Belongs to the 'phage' integrase family	NA
UHGV-0075455_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0075455_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075455_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0075455_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0075455_2	PHROG	phrog_32721	NA	unknown function
UHGV-0075455_2	UniRef90	UniRef90_X8HUR1	Putative lipoprotein	NA
UHGV-0075455_2	eggNOG-mapper	1033744.CAEL01000029_gene1310	NA	NA
UHGV-0075455_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0075455_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0075455_3	UniRef90	UniRef90_UPI0011DCBA07	LexA family transcriptional regulator	NA
UHGV-0075455_3	eggNOG-mapper	1033744.CAEL01000029_gene1309	Peptidase S24-like	NA
UHGV-0075455_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075455_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0075455_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0075455_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0075455_4	UniRef90	UniRef90_UPI000CF84637	NA	NA
UHGV-0075455_4	eggNOG-mapper	883114.HMPREF9709_01221	NA	NA
UHGV-0075455_4	Pfam	PF05339	NA	DUF739
UHGV-0075455_4	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0075455_6	PHROG	phrog_585	NA	unknown function
UHGV-0075455_6	UniRef90	UniRef90_UPI00035CA235	NA	NA
UHGV-0075455_6	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0075455_6	Pfam	PF10711	NA	DUF2513
UHGV-0075455_6	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0075455_8	PHROG	phrog_2613	NA	unknown function
UHGV-0075455_8	UniRef90	UniRef90_UPI0003056D3D	macro domain-containing protein	NA
UHGV-0075455_8	eggNOG-mapper	1033744.CAEL01000029_gene1305	Macro domain	NA
UHGV-0075455_8	Pfam	PF01661	Macro domain	Macro
UHGV-0075455_8	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0075455_8	Structural annotation	PF14519, MF_01205, NF001666, COG2110	NA	NA
UHGV-0075455_10	UniRef90	UniRef90_UPI0011DD9B93	helix-turn-helix domain-containing protein	NA
UHGV-0075455_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0075455_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0075455_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075455_13	UniRef90	UniRef90_UPI0011DC853A	AAA family ATPase	NA
UHGV-0075455_13	eggNOG-mapper	1033744.CAEL01000029_gene1298	nuclear chromosome segregation	NA
UHGV-0075455_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-0075455_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0075455_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0075455_15	PHROG	phrog_16126	NA	unknown function
UHGV-0075455_15	eggNOG-mapper	665950.HMPREF1025_01978	NA	NA
UHGV-0075455_17	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0075455_17	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0075455_17	UniRef90	UniRef90_UPI0011DD15B0	recombinase RecT	NA
UHGV-0075455_17	eggNOG-mapper	1033744.CAEL01000029_gene1294	RecT family	NA
UHGV-0075455_17	Pfam	PF03837	RecT family	RecT
UHGV-0075455_17	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0075455_17	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0075455_17	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0075455_18	PHROG	phrog_715	MazG-like pyrophosphatase	other
UHGV-0075455_18	UniRef90	UniRef90_UPI001F2A2514	MazG-like family protein	NA
UHGV-0075455_18	eggNOG-mapper	1118057.CAGX01000058_gene100	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0075455_18	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0075455_20	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0075455_20	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0075455_20	UniRef90	UniRef90_UPI0011DD67CD	MBL fold metallo-hydrolase	NA
UHGV-0075455_20	eggNOG-mapper	1033744.CAEL01000029_gene1293	Metallo-beta-lactamase superfamily	NA
UHGV-0075455_20	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0075455_20	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0075455_20	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0075455_21	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0075455_21	UniRef90	UniRef90_UPI0011DDED0F	DnaD domain protein	NA
UHGV-0075455_21	eggNOG-mapper	1033744.CAEL01000029_gene1292	Transcriptional regulator	NA
UHGV-0075455_21	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0075455_21	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0075455_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0075455_21	Structural annotation	PF09681, NF033788, COG5529	NA	NA
UHGV-0075455_22	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0075455_22	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0075455_22	UniRef90	UniRef90_UPI0011DCE5EB	ATP-binding protein	NA
UHGV-0075455_22	eggNOG-mapper	1033744.CAEL01000029_gene1291	NA	NA
UHGV-0075455_22	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0075455_22	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0075455_22	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0075455_23	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0075455_23	UniRef90	UniRef90_UPI0011DDF057	VRR-NUC domain-containing protein	NA
UHGV-0075455_23	eggNOG-mapper	1033744.CAEL01000029_gene1290	VRR-NUC domain	NA
UHGV-0075455_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0075455_23	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0075455_24	eggNOG-mapper	1347392.CCEZ01000005_gene1215	ftsk spoiiie	NA
UHGV-0075455_24	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0075455_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0075455_25	UniRef90	UniRef90_UPI0011DCA0B2	NA	NA
UHGV-0075455_25	eggNOG-mapper	1033744.CAEL01000029_gene1288	NA	NA
UHGV-0075455_25	Pfam	PF07374	NA	DUF1492
UHGV-0075455_25	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0075455_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0075455_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075455_26	UniRef90	UniRef90_UPI0011DE5890	HNH endonuclease	NA
UHGV-0075455_26	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0075455_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0075455_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0075455_26	Structural annotation	TIGR02646	NA	NA
UHGV-0075455_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0075455_27	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0075455_27	UniRef90	UniRef90_UPI0011DCE54B	DNA modification methylase	NA
UHGV-0075455_27	eggNOG-mapper	1033744.CAEL01000029_gene1287	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0075455_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0075455_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0075455_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0075455_27	COG	COG0863	DNA modification methylase	NA
UHGV-0075455_27	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0075455_28	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0075455_28	UniRef90	UniRef90_UPI0008D9B842	P27 family phage terminase small subunit	NA
UHGV-0075455_28	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0075455_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0075455_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0075455_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0075455_29	UniRef90	UniRef90_UPI0011DCFDCC	terminase large subunit	NA
UHGV-0075455_29	eggNOG-mapper	1033744.CAEL01000029_gene1285	Phage Terminase	NA
UHGV-0075455_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0075455_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0075455_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0075455_29	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0075455_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0075455_30	UniRef90	UniRef90_UPI0011DD76DF	phage portal protein	NA
UHGV-0075455_30	eggNOG-mapper	1033744.CAEL01000029_gene1284	Phage portal protein, HK97 family	NA
UHGV-0075455_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0075455_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0075455_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0075455_30	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0075455_31	KOfam	K06904	NA	NA
UHGV-0075455_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0075455_31	UniRef90	UniRef90_UPI0011DD24B9	HK97 family phage prohead protease	NA
UHGV-0075455_31	eggNOG-mapper	1033744.CAEL01000029_gene1283	Caudovirus prohead serine protease	NA
UHGV-0075455_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0075455_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0075455_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0075455_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0075455_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0075455_32	UniRef90	UniRef90_UPI0008DAEAB7	phage major capsid protein	NA
UHGV-0075455_32	eggNOG-mapper	1033744.CAEL01000029_gene1282	phage major capsid protein, HK97 family	NA
UHGV-0075455_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0075455_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0075455_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0075455_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0075455_33	PHROG	phrog_933	NA	unknown function
UHGV-0075455_34	PHROG	phrog_2550	NA	unknown function
UHGV-0075455_34	UniRef90	UniRef90_UPI0011DDAA29	phage head-tail connector protein	NA
UHGV-0075455_34	eggNOG-mapper	398512.JQKC01000009_gene454	NA	NA
UHGV-0075455_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0075455_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0075455_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0075455_35	UniRef90	UniRef90_UPI0011DCF1F1	phage head closure protein	NA
UHGV-0075455_35	eggNOG-mapper	1033744.CAEL01000029_gene1279	head-tail adaptor	NA
UHGV-0075455_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0075455_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0075455_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0075455_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0075455_36	UniRef90	UniRef90_UPI0008DAD624	HK97 gp10 family phage protein	NA
UHGV-0075455_36	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-0075455_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0075455_36	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0075455_37	PHROG	phrog_78	tail terminator	connector
UHGV-0075455_37	UniRef90	UniRef90_Q0H234	Aminopeptidase	NA
UHGV-0075455_37	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-0075455_37	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0075455_38	PHROG	phrog_88	major tail protein	tail
UHGV-0075455_38	UniRef90	UniRef90_UPI0011DDC47F	phage tail protein	NA
UHGV-0075455_38	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0075455_38	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0075455_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0075455_38	Structural annotation	PF06488, TIGR01603, COG3157	NA	NA
UHGV-0075455_39	PHROG	phrog_709	NA	unknown function
UHGV-0075455_39	UniRef90	UniRef90_B7HV45	Prophage pi2 protein 40	NA
UHGV-0075455_39	eggNOG-mapper	1111134.HMPREF1253_0376	NA	NA
UHGV-0075455_39	Structural annotation	PF11836	NA	NA
UHGV-0075455_40	PHROG	phrog_3033	NA	unknown function
UHGV-0075455_41	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-0075455_41	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0075455_41	UniRef90	UniRef90_UPI0002DE55EB	phage tail tape measure protein	NA
UHGV-0075455_41	eggNOG-mapper	1033744.CAEL01000029_gene1273	Phage-related minor tail protein	NA
UHGV-0075455_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0075455_41	Pfam	PF20637	Autophagy protein ATG5, alpha-helical bundle region	ATG5_HBR
UHGV-0075455_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0075455_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0075455_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0075455_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0075455_42	UniRef90	UniRef90_UPI000306EF07	phage tail family protein	NA
UHGV-0075455_42	eggNOG-mapper	1033744.CAEL01000029_gene1272	phage tail	NA
UHGV-0075455_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0075455_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0075455_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0075455_42	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0075455_43	PHROG	phrog_240	head protein	head and packaging
UHGV-0075455_43	eggNOG-mapper	1033744.CAEL01000029_gene1271	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-0075455_43	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0075455_44	UniRef90	UniRef90_UPI0011DDB9D8	phage tail family protein	NA
UHGV-0075455_45	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0075455_45	UniRef90	UniRef90_UPI0011DDC8B1	phage tail protein	NA
UHGV-0075455_45	eggNOG-mapper	1033744.CAEL01000029_gene1269	NA	NA
UHGV-0075455_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0075455_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0075455_45	COG	COG4926	Phage-related protein	NA
UHGV-0075455_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0075455_46	eggNOG-mapper	1033744.CAEL01000029_gene1268	NA	NA
UHGV-0075455_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0075455_48	PHROG	phrog_8124	endolysin	lysis
UHGV-0075455_48	UniRef90	UniRef90_UPI0011DDEE0F	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075455_48	eggNOG-mapper	1033744.CAEL01000029_gene1266	Cell wall hydrolase autolysin	NA
UHGV-0075455_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0075455_48	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0075455_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075455_48	Structural annotation	PF01520, PF01832, MF_00562, TIGR02883, NF009355, COG0860, COG1705	NA	NA
UHGV-0075455_49	eggNOG-mapper	1033744.CAEL01000029_gene1265	NA	NA