UHGV-0075520

Genome information

Genome length 42,165 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075520
vOTU ID	vOTU-007978
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_107022
BioSample	NA
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.98
Jumbo phage	No

Genome content
Genome length	42,165 bps
GC content	39.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.30%
Average CDS length	663.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075520_1	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0075520_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075520_2	PHROG	phrog_156	portal protein	head and packaging
UHGV-0075520_2	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0075520_2	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0075520_3	KOfam	K07584	NA	NA
UHGV-0075520_3	PHROG	phrog_4478	peptidase	other
UHGV-0075520_3	UniRef90	UniRef90_A0A841YBI3	Ribosomal-processing cysteine protease Prp	NA
UHGV-0075520_3	eggNOG-mapper	562982.HMPREF0432_00498	Cysteine protease Prp	NA
UHGV-0075520_3	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0075520_3	COG	COG2868	NA	NA
UHGV-0075520_3	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0075520_4	PHROG	phrog_13908	NA	unknown function
UHGV-0075520_4	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0075520_5	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0075520_5	UniRef90	UniRef90_A0A6L5YGG5	N4-gp56 family major capsid protein	NA
UHGV-0075520_5	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0075520_5	Pfam	PF13252	NA	DUF4043
UHGV-0075520_5	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0075520_5	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0075520_7	PHROG	phrog_12105	NA	unknown function
UHGV-0075520_8	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0075520_8	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0075520_8	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0075520_9	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0075520_9	COG	COG4926	Phage-related protein	NA
UHGV-0075520_9	Structural annotation	PF07902	NA	NA
UHGV-0075520_11	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0075520_12	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0075520_12	PHROG	phrog_22978	NA	unknown function
UHGV-0075520_12	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-0075520_13	Structural annotation	PF10651, PF01664, NF032891	NA	NA
UHGV-0075520_15	KOfam	K14059	int; integrase	NA
UHGV-0075520_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0075520_15	UniRef90	UniRef90_UPI0008345DF0	tyrosine-type recombinase/integrase	NA
UHGV-0075520_15	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0075520_15	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0075520_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075520_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075520_15	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0075520_18	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0075520_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075520_18	UniRef90	UniRef90_UPI001D5A1FD7	helix-turn-helix transcriptional regulator	NA
UHGV-0075520_18	eggNOG-mapper	537013.CLOSTMETH_02500	NA	NA
UHGV-0075520_18	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0075520_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075520_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075520_18	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0075520_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0075520_23	UniRef90	UniRef90_UPI000D2FBDEF	siphovirus Gp157 family protein	NA
UHGV-0075520_23	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0075520_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0075520_23	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0075520_24	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0075520_24	UniRef90	UniRef90_UPI001BABF1B9	ERF family protein	NA
UHGV-0075520_24	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0075520_24	Pfam	PF04404	ERF superfamily	ERF
UHGV-0075520_24	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0075520_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0075520_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0075520_25	UniRef90	UniRef90_F4GLF7	Single-stranded DNA-binding protein	NA
UHGV-0075520_25	eggNOG-mapper	760011.Spico_0701	Single-stranded DNA-binding protein	NA
UHGV-0075520_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0075520_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0075520_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0075520_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0075520_26	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0075520_26	UniRef90	UniRef90_A0A2T6EDZ3	Replication protein	NA
UHGV-0075520_26	eggNOG-mapper	1295642.H839_08149	Replication initiation and membrane attachment	NA
UHGV-0075520_26	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0075520_26	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0075520_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0075520_28	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0075520_28	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0075520_28	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0075520_28	Pfam	PF06356	NA	DUF1064
UHGV-0075520_28	Structural annotation	PF06356	NA	NA
UHGV-0075520_29	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0075520_34	Structural annotation	PF05129	NA	NA
UHGV-0075520_36	PHROG	phrog_301	secreted protein	other
UHGV-0075520_36	UniRef90	UniRef90_UPI00112B19FF	NA	NA
UHGV-0075520_36	eggNOG-mapper	397290.C810_05192	NA	NA
UHGV-0075520_36	Structural annotation	PF07509, MF_00720, NF038397, COG3390	NA	NA
UHGV-0075520_39	PHROG	phrog_10714	NA	unknown function
UHGV-0075520_39	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0075520_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0075520_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075520_40	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0075520_40	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0075520_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075520_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0075520_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0075520_42	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0075520_42	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0075520_42	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0075520_43	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0075520_44	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0075520_44	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0075520_44	UniRef90	UniRef90_A0A1G5ET13	Methyltransferase	NA
UHGV-0075520_44	eggNOG-mapper	1122243.KB903771_gene1539	DNA methylase	NA
UHGV-0075520_44	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0075520_44	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0075520_44	COG	COG0863	DNA modification methylase	NA
UHGV-0075520_44	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0075520_45	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0075520_45	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0075520_45	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0075520_45	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0075520_45	Pfam	PF00692	dUTPase	dUTPase
UHGV-0075520_45	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0075520_45	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0075520_45	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0075520_46	PHROG	phrog_1863	NA	unknown function
UHGV-0075520_46	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0075520_46	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0075520_47	PHROG	phrog_443	holin	lysis
UHGV-0075520_47	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0075520_47	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0075520_47	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0075520_47	Structural annotation	PF16945	NA	NA
UHGV-0075520_48	PHROG	phrog_918	NA	unknown function
UHGV-0075520_48	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0075520_48	eggNOG-mapper	272626.lin0103	NA	NA
UHGV-0075520_48	Pfam	PF19791	NA	DUF6275
UHGV-0075520_48	Structural annotation	PF19791	NA	NA
UHGV-0075520_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0075520_49	PHROG	phrog_291	endolysin	lysis
UHGV-0075520_49	UniRef90	UniRef90_A0A373KPS8	PG_binding_1 domain-containing protein	NA
UHGV-0075520_49	eggNOG-mapper	1120933.ATUY01000002_gene158	lysozyme activity	NA
UHGV-0075520_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0075520_49	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0075520_49	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0075520_49	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0075520_50	UniRef90	UniRef90_A0A412ULX9	XRE family transcriptional regulator	NA
UHGV-0075520_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075520_50	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0075520_50	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0075520_56	eggNOG-mapper	397290.C810_01713	NA	NA
UHGV-0075520_57	PHROG	phrog_15863	NA	unknown function
UHGV-0075520_57	UniRef90	UniRef90_A0A415YCN0	J domain-containing protein	NA
UHGV-0075520_57	eggNOG-mapper	888064.HMPREF9088_2252	DnaJ molecular chaperone homology domain	NA
UHGV-0075520_57	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0075520_59	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075520_59	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0075520_59	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0075520_59	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0075520_59	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0075520_59	COG	COG1783	Phage terminase large subunit	NA