UHGV-0075575

Genome information

Genome length 30,097 bps

CDS count 45

Completeness 92.45% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075575
vOTU ID	vOTU-014034
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_125445
BioSample	SAMEA2737841
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.45% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.14
Jumbo phage	No

Genome content
Genome length	30,097 bps
GC content	43.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.48%
Average CDS length	630.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075575_1	PHROG	phrog_419	NA	unknown function
UHGV-0075575_1	UniRef90	UniRef90_UPI001CBFD05B	PGDYG domain-containing protein	NA
UHGV-0075575_1	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0075575_2	PHROG	phrog_7395	NA	unknown function
UHGV-0075575_2	UniRef90	UniRef90_UPI0009F594E1	NA	NA
UHGV-0075575_2	eggNOG-mapper	886882.PPSC2_c2958	NA	NA
UHGV-0075575_2	Pfam	PF14015	NA	DUF4231
UHGV-0075575_2	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0075575_2	Structural annotation	PF14015, NF033634	NA	NA
UHGV-0075575_3	PHROG	phrog_16443	NA	unknown function
UHGV-0075575_3	eggNOG-mapper	1071073.KI530537_gene2567	NA	NA
UHGV-0075575_3	AcrCatalog	cluster_1135	NA	NA
UHGV-0075575_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0075575_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0075575_4	UniRef90	UniRef90_A0A417PKX0	XRE family transcriptional regulator	NA
UHGV-0075575_4	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0075575_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0075575_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0075575_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0075575_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0075575_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0075575_5	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0075575_5	UniRef90	UniRef90_A0A8F2JAH4	Helix-turn-helix transcriptional regulator	NA
UHGV-0075575_5	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0075575_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0075575_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075575_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075575_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0075575_7	PHROG	phrog_31564	NA	unknown function
UHGV-0075575_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0075575_10	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0075575_10	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0075575_11	UniRef90	UniRef90_A0A417PKX1	RNase H type-1 domain-containing protein	NA
UHGV-0075575_11	eggNOG-mapper	1116472.MGMO_8c00720	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0075575_11	Pfam	PF00075	RNase H	RNase_H
UHGV-0075575_11	COG	COG0328	Ribonuclease HI	NA
UHGV-0075575_11	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0075575_12	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0075575_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0075575_13	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0075575_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0075575_13	UniRef90	UniRef90_A0A373ZDW3	DNA methylase N-4	NA
UHGV-0075575_13	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0075575_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0075575_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0075575_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0075575_13	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0075575_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0075575_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0075575_14	UniRef90	UniRef90_A0A3R6VZF5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075575_14	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0075575_14	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0075575_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0075575_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0075575_14	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0075575_17	PHROG	phrog_874	NA	unknown function
UHGV-0075575_17	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0075575_17	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0075575_17	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0075575_19	PHROG	phrog_10714	NA	unknown function
UHGV-0075575_19	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0075575_19	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0075575_20	PHROG	phrog_20593	NA	unknown function
UHGV-0075575_21	PHROG	phrog_7566	NA	unknown function
UHGV-0075575_21	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0075575_23	UniRef90	UniRef90_A0A174QL97	Chemotaxis protein	NA
UHGV-0075575_23	eggNOG-mapper	610130.Closa_1388	NA	NA
UHGV-0075575_23	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0075575_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0075575_25	PHROG	phrog_435	endolysin	lysis
UHGV-0075575_25	UniRef90	UniRef90_A0A3R6ZZA0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075575_25	eggNOG-mapper	1408437.JNJN01000040_gene194	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075575_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0075575_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075575_25	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0075575_27	PHROG	phrog_11237	NA	unknown function
UHGV-0075575_27	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0075575_29	PHROG	phrog_199	holin	lysis
UHGV-0075575_29	UniRef90	UniRef90_A0A3R6TFD1	Holin	NA
UHGV-0075575_29	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0075575_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0075575_29	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0075575_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0075575_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0075575_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0075575_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075575_30	UniRef90	UniRef90_A0A3R6X5W2	HNH endonuclease	NA
UHGV-0075575_30	eggNOG-mapper	358681.BBR47_29120	HNH nucleases	NA
UHGV-0075575_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0075575_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0075575_30	Structural annotation	TIGR02646	NA	NA
UHGV-0075575_31	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0075575_31	UniRef90	UniRef90_R5V087	Phage terminase small subunit P27 family	NA
UHGV-0075575_31	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0075575_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0075575_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0075575_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0075575_32	UniRef90	UniRef90_A0A373ZFM8	Terminase large subunit	NA
UHGV-0075575_32	eggNOG-mapper	1121428.DESHY_20134___1	Phage Terminase	NA
UHGV-0075575_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0075575_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0075575_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0075575_32	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0075575_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0075575_33	UniRef90	UniRef90_A0A373ZD56	Phage portal protein	NA
UHGV-0075575_33	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0075575_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0075575_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0075575_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0075575_33	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0075575_34	KOfam	K06904	NA	NA
UHGV-0075575_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0075575_34	UniRef90	UniRef90_A0A417PEP5	HK97 family phage prohead protease	NA
UHGV-0075575_34	eggNOG-mapper	913865.DOT_5634	Phage prohead protease, HK97 family	NA
UHGV-0075575_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0075575_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0075575_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0075575_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0075575_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0075575_35	UniRef90	UniRef90_A0A373ZD06	Phage major capsid protein	NA
UHGV-0075575_35	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0075575_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0075575_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0075575_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0075575_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0075575_36	PHROG	phrog_2550	NA	unknown function
UHGV-0075575_36	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0075575_36	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0075575_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0075575_37	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0075575_37	UniRef90	UniRef90_A0A3R6UXW7	Phage head-tail adapter protein	NA
UHGV-0075575_37	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0075575_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0075575_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0075575_38	UniRef90	UniRef90_UPI00189E13A9	HK97 gp10 family phage protein	NA
UHGV-0075575_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0075575_39	PHROG	phrog_78	tail terminator	connector
UHGV-0075575_39	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0075575_39	Structural annotation	PF20765	NA	NA
UHGV-0075575_40	PHROG	phrog_88	major tail protein	tail
UHGV-0075575_40	UniRef90	UniRef90_A0A373ZCY5	Phage tail protein	NA
UHGV-0075575_40	eggNOG-mapper	663278.Ethha_1843	phage major tail protein, phi13 family	NA
UHGV-0075575_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0075575_40	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0075575_41	PHROG	phrog_709	NA	unknown function
UHGV-0075575_41	Structural annotation	PF11836	NA	NA
UHGV-0075575_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0075575_42	UniRef90	UniRef90_A0A373ZD47	Phage tail tape measure protein	NA
UHGV-0075575_42	eggNOG-mapper	180332.JTGN01000004_gene2272	Phage tail tape measure protein, TP901 family	NA
UHGV-0075575_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0075575_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0075575_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0075575_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0075575_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0075575_44	PHROG	phrog_23052	NA	unknown function
UHGV-0075575_44	eggNOG-mapper	483218.BACPEC_01320	NA	NA
UHGV-0075575_44	Structural annotation	PF14879, PF05113, NF033848, NF033147, COG3500, COG4935	NA	NA
UHGV-0075575_45	PHROG	phrog_19291	NA	unknown function
UHGV-0075575_45	eggNOG-mapper	1232449.BAHV02000021_gene1072	NA	NA
UHGV-0075575_45	Structural annotation	PF02191, COG3823	NA	NA